Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 140652..140920 | Replicon | chromosome |
| Accession | NZ_CP042945 | ||
| Organism | Escherichia fergusonii strain ATCC 35471 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 140690..140793 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 140652..140920 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FV159_RS01510 | 137809..139248 | + | 1440 | WP_002431585.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FV159_RS01515 | 139367..139603 | + | 237 | WP_002431586.1 | DUF1480 family protein | - |
| FV159_RS01520 | 139708..139899 | + | 192 | WP_002431587.1 | YebW family protein | - |
| FV159_RS01525 | 139900..140556 | - | 657 | WP_000812708.1 | protein-serine/threonine phosphatase | - |
| - | 140652..140920 | + | 269 | - | - | Antitoxin |
| - | 140690..140793 | - | 104 | - | - | Toxin |
| FV159_RS01530 | 140950..141291 | - | 342 | WP_000976177.1 | YebY family protein | - |
| FV159_RS01535 | 141303..142175 | - | 873 | WP_000928495.1 | copper homeostasis membrane protein CopD | - |
| FV159_RS01540 | 142178..142552 | - | 375 | WP_000168726.1 | CopC domain-containing protein YobA | - |
| FV159_RS01545 | 142691..142921 | + | 231 | WP_000700614.1 | DNA polymerase III subunit theta | - |
| FV159_RS01550 | 143028..143684 | + | 657 | WP_000075607.1 | carbon-nitrogen hydrolase family protein | - |
| FV159_RS01555 | 143708..144370 | + | 663 | WP_000946659.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136689 NZ_CP042945:c140793-140690 [Escherichia fergusonii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT136689 NZ_CP042945:140652-140920 [Escherichia fergusonii]
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAATGGAATATTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
