Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3524518..3524689 | Replicon | chromosome |
| Accession | NZ_CP042941 | ||
| Organism | Atlantibacter hermannii strain ATCC 33651 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3524578..3524682 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3524518..3524689 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FV157_RS16325 | 3519661..3521721 | + | 2061 | WP_148052672.1 | oligopeptidase B | - |
| FV157_RS16330 | 3521718..3522386 | - | 669 | WP_002462890.1 | exodeoxyribonuclease X | - |
| FV157_RS16335 | 3522432..3522662 | - | 231 | WP_148052673.1 | DNA polymerase III subunit theta | - |
| FV157_RS16340 | 3522813..3523187 | + | 375 | WP_148052674.1 | CopC domain-containing protein YobA | - |
| FV157_RS16345 | 3523189..3524064 | + | 876 | WP_002462885.1 | copper homeostasis membrane protein CopD | - |
| FV157_RS16350 | 3524089..3524427 | + | 339 | WP_040459559.1 | YebY family protein | - |
| - | 3524518..3524689 | - | 172 | - | - | Antitoxin |
| - | 3524578..3524682 | + | 105 | - | - | Toxin |
| FV157_RS16355 | 3524963..3525160 | - | 198 | WP_148052675.1 | hypothetical protein | - |
| FV157_RS16360 | 3525195..3525839 | + | 645 | WP_148052676.1 | metallophosphoesterase | - |
| FV157_RS16365 | 3525840..3526031 | - | 192 | WP_002462879.1 | YebW family protein | - |
| FV157_RS16370 | 3526139..3526378 | - | 240 | WP_002462877.1 | YebV family protein | - |
| FV157_RS16375 | 3526493..3527929 | - | 1437 | WP_148052677.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T136648 NZ_CP042941:3524578-3524682 [Atlantibacter hermannii]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 172 bp
>AT136648 NZ_CP042941:c3524689-3524518 [Atlantibacter hermannii]
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
AACAGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGT
GGTTCAAAAAAA
