Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2833304..2833454 | Replicon | chromosome |
| Accession | NZ_CP042930 | ||
| Organism | Leclercia adecarboxylata strain J656 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2833316..2833418 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2833304..2833454 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTX45_RS13605 | 2829206..2830750 | + | 1545 | WP_150871570.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FTX45_RS13610 | 2830854..2831093 | + | 240 | WP_032611546.1 | YebV family protein | - |
| FTX45_RS13615 | 2831197..2831388 | + | 192 | WP_032611549.1 | YebW family protein | - |
| FTX45_RS13620 | 2831389..2832033 | - | 645 | WP_103792069.1 | protein-serine/threonine phosphatase | - |
| FTX45_RS13625 | 2832212..2833159 | + | 948 | WP_150871573.1 | VirK/YbjX family protein | - |
| - | 2833304..2833454 | + | 151 | - | - | Antitoxin |
| - | 2833316..2833418 | - | 103 | - | - | Toxin |
| FTX45_RS13630 | 2833560..2833898 | - | 339 | WP_032611900.1 | YebY family protein | - |
| FTX45_RS13635 | 2833913..2834785 | - | 873 | WP_150871576.1 | copper homeostasis membrane protein CopD | - |
| FTX45_RS13640 | 2834787..2835161 | - | 375 | WP_032611904.1 | CopC domain-containing protein YobA | - |
| FTX45_RS13645 | 2835298..2835528 | + | 231 | WP_032611906.1 | DNA polymerase III subunit theta | - |
| FTX45_RS13650 | 2835636..2836292 | + | 657 | WP_032611908.1 | carbon-nitrogen hydrolase family protein | - |
| FTX45_RS13655 | 2836317..2836979 | + | 663 | WP_032611910.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T136608 NZ_CP042930:c2833418-2833316 [Leclercia adecarboxylata]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 151 bp
>AT136608 NZ_CP042930:2833304-2833454 [Leclercia adecarboxylata]
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CTTTCAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCT
AAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCACTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
