Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2061077..2061348 | Replicon | chromosome |
| Accession | NZ_CP042901 | ||
| Organism | Escherichia coli strain CFSAN061762 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2061207..2061310 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2061077..2061348 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA898_RS09735 | 2057632..2058294 | - | 663 | WP_001556661.1 | exodeoxyribonuclease X | - |
| CA898_RS09740 | 2058318..2058974 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CA898_RS09745 | 2059076..2059306 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CA898_RS09750 | 2059445..2059819 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| CA898_RS09755 | 2059823..2060695 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| CA898_RS09760 | 2060708..2061049 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2061077..2061348 | - | 272 | - | - | Antitoxin |
| - | 2061207..2061310 | + | 104 | - | - | Toxin |
| CA898_RS09765 | 2061445..2062101 | + | 657 | WP_116335588.1 | protein-serine/threonine phosphatase | - |
| CA898_RS09770 | 2062102..2062293 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CA898_RS09775 | 2062398..2062634 | - | 237 | WP_001338166.1 | YebV family protein | - |
| CA898_RS09780 | 2062752..2064191 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136547 NZ_CP042901:2061207-2061310 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136547 NZ_CP042901:c2061348-2061077 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
