Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064117..2064388 | Replicon | chromosome |
| Accession | NZ_CP042896 | ||
| Organism | Escherichia coli strain CFSAN061771 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064247..2064350 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064117..2064388 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CA902_RS09710 | 2060672..2061334 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CA902_RS09715 | 2061358..2062014 | - | 657 | WP_000011663.1 | carbon-nitrogen hydrolase family protein YobB | - |
| CA902_RS09720 | 2062116..2062346 | - | 231 | WP_077516099.1 | DNA polymerase III subunit theta | - |
| CA902_RS09725 | 2062485..2062859 | + | 375 | WP_000168737.1 | CopC domain-containing protein YobA | - |
| CA902_RS09730 | 2062863..2063735 | + | 873 | WP_000879323.1 | copper homeostasis membrane protein CopD | - |
| CA902_RS09735 | 2063748..2064089 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2064117..2064388 | - | 272 | - | - | Antitoxin |
| - | 2064247..2064350 | + | 104 | - | - | Toxin |
| CA902_RS09740 | 2064485..2065141 | + | 657 | WP_000812749.1 | protein-serine/threonine phosphatase | - |
| CA902_RS09745 | 2065142..2065333 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CA902_RS09750 | 2065438..2065674 | - | 237 | WP_001295499.1 | YebV family protein | - |
| CA902_RS09755 | 2065792..2067231 | - | 1440 | WP_024175799.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136488 NZ_CP042896:2064247-2064350 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136488 NZ_CP042896:c2064388-2064117 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
