Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4858112..4858383 | Replicon | chromosome |
| Accession | NZ_CP042892 | ||
| Organism | Escherichia coli O10:H32 strain NMBU-W12E19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4858242..4858345 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4858112..4858383 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVP48_RS25775 | 4854667..4855329 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| FVP48_RS25780 | 4855353..4856009 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FVP48_RS25785 | 4856111..4856341 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FVP48_RS25790 | 4856480..4856854 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FVP48_RS25795 | 4856858..4857730 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FVP48_RS25800 | 4857743..4858084 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4858112..4858383 | - | 272 | - | - | Antitoxin |
| - | 4858242..4858345 | + | 104 | - | - | Toxin |
| FVP48_RS25805 | 4858480..4859136 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| FVP48_RS25810 | 4859137..4859328 | - | 192 | WP_001338167.1 | YebW family protein | - |
| FVP48_RS25815 | 4859433..4859669 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| FVP48_RS25820 | 4859787..4861226 | - | 1440 | WP_001351758.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136449 NZ_CP042892:4858242-4858345 [Escherichia coli O10:H32]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136449 NZ_CP042892:c4858383-4858112 [Escherichia coli O10:H32]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
