Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3113601..3113872 | Replicon | chromosome |
| Accession | NZ_CP042878 | ||
| Organism | Escherichia coli strain NMBU_W05E18 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3113639..3113742 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3113601..3113872 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVA71_RS15090 | 3110758..3112197 | + | 1440 | WP_024186439.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FVA71_RS15095 | 3112315..3112551 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FVA71_RS15100 | 3112656..3112847 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FVA71_RS15105 | 3112848..3113504 | - | 657 | WP_001551231.1 | protein-serine/threonine phosphatase | - |
| - | 3113601..3113872 | + | 272 | - | - | Antitoxin |
| - | 3113639..3113742 | - | 104 | - | - | Toxin |
| FVA71_RS15110 | 3113900..3114241 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FVA71_RS15115 | 3114254..3115126 | - | 873 | WP_001551232.1 | copper homeostasis membrane protein CopD | - |
| FVA71_RS15120 | 3115130..3115504 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FVA71_RS15125 | 3115643..3115873 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FVA71_RS15130 | 3115975..3116631 | + | 657 | WP_049144542.1 | carbon-nitrogen hydrolase family protein | - |
| FVA71_RS15135 | 3116655..3117317 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136365 NZ_CP042878:c3113742-3113639 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136365 NZ_CP042878:3113601-3113872 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
