Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 1963546..1963817 Replicon chromosome
Accession NZ_CP042867
Organism Escherichia coli strain ATCC BAA-196

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 1963676..1963779 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 1963546..1963817 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
BAA196FS_RS09425 1960101..1960763 - 663 WP_000944256.1 exodeoxyribonuclease X -
BAA196FS_RS09430 1960787..1961443 - 657 WP_000011658.1 carbon-nitrogen hydrolase family protein -
BAA196FS_RS09435 1961545..1961775 - 231 WP_000916763.1 DNA polymerase III subunit theta -
BAA196FS_RS09440 1961914..1962288 + 375 WP_000168747.1 CopC domain-containing protein YobA -
BAA196FS_RS09445 1962292..1963164 + 873 WP_000879289.1 copper homeostasis membrane protein CopD -
BAA196FS_RS09450 1963177..1963518 + 342 WP_000976476.1 YebY family protein -
- 1963546..1963817 - 272 - - Antitoxin
- 1963676..1963779 + 104 - - Toxin
BAA196FS_RS09455 1963914..1964570 + 657 WP_000812724.1 protein-serine/threonine phosphatase -
BAA196FS_RS09460 1964571..1964762 - 192 WP_000457842.1 YebW family protein -
BAA196FS_RS09465 1964867..1965103 - 237 WP_001295499.1 DUF1480 family protein -
BAA196FS_RS09470 1965221..1966660 - 1440 WP_001352260.1 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T136330 NZ_CP042867:1963676-1963779 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT

Antitoxin


Download         Length: 272 bp

>AT136330 NZ_CP042867:c1963817-1963546 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References