Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1963638..1963909 | Replicon | chromosome |
| Accession | NZ_CP042865 | ||
| Organism | Escherichia coli strain ATCC BAA-196 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1963768..1963871 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1963638..1963909 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BAA196NC_RS09425 | 1960193..1960855 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| BAA196NC_RS09430 | 1960879..1961535 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| BAA196NC_RS09435 | 1961637..1961867 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BAA196NC_RS09440 | 1962006..1962380 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BAA196NC_RS09445 | 1962384..1963256 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| BAA196NC_RS09450 | 1963269..1963610 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 1963638..1963909 | - | 272 | - | - | Antitoxin |
| - | 1963768..1963871 | + | 104 | - | - | Toxin |
| BAA196NC_RS09455 | 1964006..1964662 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| BAA196NC_RS09460 | 1964663..1964854 | - | 192 | WP_000457842.1 | YebW family protein | - |
| BAA196NC_RS09465 | 1964959..1965195 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BAA196NC_RS09470 | 1965313..1966752 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136299 NZ_CP042865:1963768-1963871 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136299 NZ_CP042865:c1963909-1963638 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
