Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2627442..2627713 | Replicon | chromosome |
| Accession | NZ_CP042845 | ||
| Organism | Escherichia coli strain JME65 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2627480..2627583 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2627442..2627713 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FVE21_RS12850 | 2624599..2626038 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FVE21_RS12855 | 2626156..2626392 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FVE21_RS12860 | 2626497..2626688 | + | 192 | WP_000457842.1 | YebW family protein | - |
| FVE21_RS12865 | 2626689..2627345 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2627442..2627713 | + | 272 | - | - | Antitoxin |
| - | 2627480..2627583 | - | 104 | - | - | Toxin |
| FVE21_RS12870 | 2627741..2628082 | - | 342 | WP_000976476.1 | YebY family protein | - |
| FVE21_RS12875 | 2628095..2628967 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FVE21_RS12880 | 2628971..2629345 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FVE21_RS12885 | 2629484..2629714 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FVE21_RS12890 | 2629816..2630472 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FVE21_RS12895 | 2630496..2631158 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T136178 NZ_CP042845:c2627583-2627480 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT136178 NZ_CP042845:2627442-2627713 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
