Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 2605905..2606430 Replicon chromosome
Accession NZ_CP042652
Organism Pseudoarcobacter acticola strain KCTC 52212

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag AACT_RS13290 Protein ID WP_172127653.1
Coordinates 2605905..2606189 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag AACT_RS13295 Protein ID WP_172127655.1
Coordinates 2606179..2606430 (-) Length 84 a.a.

Genomic Context

AACT_RS13265AACT_RS13270AACT_RS13275AACT_RS13280AACT_RS13285AACT_RS13290AACT_RS13295AACT_RS13300AACT_RS13305AACT_RS13310AACT_RS13315AACT_RS13320AACT_RS13325AACT_RS13330AACT_RS13335
Location: 2601631..2601864 (234 bp)
Type: Others
Protein ID: WP_172127643.1
Location: 2601848..2602252 (405 bp)
Type: Others
Protein ID: WP_172127645.1
Location: 2602277..2602987 (711 bp)
Type: Others
Protein ID: WP_172127647.1
Location: 2603042..2603776 (735 bp)
Type: Others
Protein ID: WP_172127649.1
Location: 2603769..2605880 (2112 bp)
Type: Others
Protein ID: WP_172127651.1
Location: 2605905..2606189 (285 bp)
Type: Toxin
Protein ID: WP_172127653.1
Location: 2606179..2606430 (252 bp)
Type: Antitoxin
Protein ID: WP_172127655.1
Location: 2606687..2607745 (1059 bp)
Type: Others
Protein ID: WP_172127657.1
Location: 2607764..2608123 (360 bp)
Type: Others
Protein ID: WP_172128699.1
Location: 2608464..2608652 (189 bp)
Type: Others
Protein ID: WP_172127659.1
Location: 2608706..2609011 (306 bp)
Type: Others
Protein ID: WP_172127661.1
Location: 2609011..2609256 (246 bp)
Type: Others
Protein ID: WP_172127663.1
Location: 2609393..2609776 (384 bp)
Type: Others
Protein ID: WP_172127665.1
Location: 2609805..2610590 (786 bp)
Type: Others
Protein ID: WP_172127667.1
Location: 2610618..2611232 (615 bp)
Type: Others
Protein ID: WP_172127669.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
AACT_RS132652601631..2601864+234WP_172127643.1hypothetical protein-
AACT_RS132702601848..2602252+405WP_172127645.1ester cyclase-
AACT_RS132752602277..2602987+711WP_172127647.12OG-Fe(II) oxygenase-
AACT_RS132802603042..2603776+735WP_172127649.1phytanoyl-CoA dioxygenase family protein-
AACT_RS132852603769..2605880+2112WP_172127651.1helix-hairpin-helix domain-containing protein-
AACT_RS132902605905..2606189-285WP_172127653.1type II toxin-antitoxin system RelE/ParE family toxinToxin
AACT_RS132952606179..2606430-252WP_172127655.1type II toxin-antitoxin system Phd/YefM family antitoxinAntitoxin
AACT_RS133002606687..2607745-1059WP_172127657.1hypothetical protein-
AACT_RS133052607764..2608123-360WP_172128699.1DUF4238 domain-containing protein-
AACT_RS133102608464..2608652-189WP_172127659.1DUF4238 domain-containing protein-
AACT_RS133152608706..2609011-306WP_172127661.1CcdB family protein-
AACT_RS133202609011..2609256-246WP_172127663.1type II toxin-antitoxin system CcdA family antitoxin-
AACT_RS133252609393..2609776-384WP_172127665.1Rid family detoxifying hydrolase-
AACT_RS133302609805..2610590-786WP_172127667.1NUDIX domain-containing protein-
AACT_RS133352610618..2611232-615WP_172127669.1LysE family transporter-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-83)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(10-71)


Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11228.14 Da        Isoelectric Point: 10.3190

>T136026 WP_172127653.1 NZ_CP042652:c2606189-2605905 [Pseudoarcobacter acticola]
MTYNLEFKPKALKEWSKLGSTIKEQFKNKLKERLENPRVEKDKLSGYENVYKIKLRTVGYRLAYEVKDEEIIVLVLSVGK
RENDKIYKNLKGRF

Download         Length: 285 bp

>T136026 NZ_CP042652:c2606189-2605905 [Pseudoarcobacter acticola]
ATGACTTATAATCTTGAATTTAAACCTAAAGCTTTAAAAGAATGGAGTAAATTAGGGTCTACTATAAAAGAACAATTCAA
AAATAAGTTAAAAGAGAGATTAGAAAATCCAAGAGTAGAAAAAGATAAACTAAGCGGATATGAAAATGTTTATAAAATCA
AATTAAGAACAGTTGGTTATAGACTTGCCTATGAAGTAAAAGATGAAGAAATAATCGTTCTTGTACTAAGTGTTGGAAAA
AGAGAAAATGATAAAATTTACAAAAATTTAAAAGGTAGATTTTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9373.80 Da        Isoelectric Point: 4.5219

>AT136026 WP_172127655.1 NZ_CP042652:c2606430-2606179 [Pseudoarcobacter acticola]
MQAILAKYTASITELKKSPTQLLNQADNEVIAILNHNIPSAYLVPSKLYEKMMDIIDDYHLSLEVEKSLKDSDTPIKVNL
DDL

Download         Length: 252 bp

>AT136026 NZ_CP042652:c2606430-2606179 [Pseudoarcobacter acticola]
ATGCAAGCAATTTTAGCAAAGTATACGGCCAGTATTACTGAACTTAAAAAGTCTCCTACTCAATTGCTAAATCAAGCAGA
TAATGAAGTTATCGCAATTTTAAATCATAATATTCCAAGTGCTTATTTGGTTCCAAGTAAATTATATGAAAAAATGATGG
ATATTATAGATGATTATCATTTATCTCTTGAAGTTGAAAAATCTCTAAAGGATTCAGATACACCAATTAAAGTAAACTTA
GATGACTTATAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References