Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2064634..2064905 | Replicon | chromosome |
| Accession | NZ_CP042588 | ||
| Organism | Escherichia coli strain PK6 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2064764..2064867 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2064634..2064905 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FTO72_RS10170 | 2061189..2061851 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FTO72_RS10175 | 2061875..2062531 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FTO72_RS10180 | 2062633..2062863 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FTO72_RS10185 | 2063002..2063376 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FTO72_RS10190 | 2063380..2064252 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| FTO72_RS10195 | 2064265..2064606 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2064634..2064905 | - | 272 | - | - | Antitoxin |
| - | 2064764..2064867 | + | 104 | - | - | Toxin |
| FTO72_RS10200 | 2065002..2065658 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FTO72_RS10205 | 2065659..2065850 | - | 192 | WP_000457842.1 | YebW family protein | - |
| FTO72_RS10210 | 2065955..2066191 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FTO72_RS10215 | 2066309..2067748 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135982 NZ_CP042588:2064764-2064867 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT135982 NZ_CP042588:c2064905-2064634 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
