Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1986659..1986930 | Replicon | chromosome |
| Accession | NZ_CP042585 | ||
| Organism | Escherichia coli strain LD91-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1986789..1986892 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1986659..1986930 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FQR64_RS10080 | 1983214..1983876 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FQR64_RS10085 | 1983900..1984556 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FQR64_RS10090 | 1984658..1984888 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FQR64_RS10095 | 1985027..1985401 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| FQR64_RS10100 | 1985405..1986277 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FQR64_RS10105 | 1986290..1986631 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1986659..1986930 | - | 272 | - | - | Antitoxin |
| - | 1986789..1986892 | + | 104 | - | - | Toxin |
| FQR64_RS10110 | 1987027..1987683 | + | 657 | WP_000812723.1 | protein-serine/threonine phosphatase | - |
| FQR64_RS10115 | 1987684..1987875 | - | 192 | WP_001338167.1 | YebW family protein | - |
| FQR64_RS10120 | 1987980..1988216 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FQR64_RS10125 | 1988334..1989773 | - | 1440 | WP_001352399.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135954 NZ_CP042585:1986789-1986892 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT135954 NZ_CP042585:c1986930-1986659 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAATAACTGAGGCGGTTTTTTTAT
