Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2891728..2891929 | Replicon | chromosome |
| Accession | NZ_CP042571 | ||
| Organism | Enterobacter hormaechei strain E5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2891733..2891836 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2891728..2891929 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR760_RS14105 | 2887975..2889438 | + | 1464 | WP_032671284.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FR760_RS14110 | 2889543..2889782 | + | 240 | WP_006811010.1 | YebV family protein | - |
| FR760_RS14115 | 2889817..2890461 | - | 645 | WP_023306475.1 | protein-serine/threonine phosphatase | - |
| FR760_RS14120 | 2890629..2891609 | + | 981 | WP_023306476.1 | VirK/YbjX family protein | - |
| - | 2891728..2891929 | + | 202 | - | - | Antitoxin |
| - | 2891733..2891836 | - | 104 | - | - | Toxin |
| FR760_RS14130 | 2891979..2892317 | - | 339 | WP_022648464.1 | YebY family protein | - |
| FR760_RS14135 | 2892334..2893203 | - | 870 | WP_023300432.1 | copper homeostasis membrane protein CopD | - |
| FR760_RS14140 | 2893205..2893576 | - | 372 | WP_023300433.1 | CopC domain-containing protein YobA | - |
| FR760_RS14145 | 2893714..2893944 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FR760_RS14150 | 2894056..2894694 | + | 639 | WP_022648467.1 | carbon-nitrogen hydrolase family protein | - |
| FR760_RS14155 | 2894719..2895381 | + | 663 | WP_022648468.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135919 NZ_CP042571:c2891836-2891733 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT135919 NZ_CP042571:2891728-2891929 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
