Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2560795..2560963 | Replicon | chromosome |
| Accession | NZ_CP042545 | ||
| Organism | Klebsiella michiganensis strain C52 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2560853..2560956 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2560795..2560963 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR848_RS12395 | 2555922..2557982 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| FR848_RS12400 | 2557989..2558648 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| FR848_RS12405 | 2558727..2558957 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| FR848_RS12410 | 2559093..2559467 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| FR848_RS12415 | 2559472..2560341 | + | 870 | WP_038424672.1 | copper homeostasis membrane protein CopD | - |
| FR848_RS12420 | 2560358..2560696 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2560795..2560963 | - | 169 | - | - | Antitoxin |
| - | 2560853..2560956 | + | 104 | - | - | Toxin |
| FR848_RS12425 | 2561081..2562040 | - | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| FR848_RS12430 | 2562055..2564385 | - | 2331 | WP_038424671.1 | fimbrial biogenesis outer membrane usher protein | - |
| FR848_RS12435 | 2564388..2565152 | - | 765 | WP_038424670.1 | molecular chaperone | - |
| FR848_RS12440 | 2565171..2565689 | - | 519 | WP_038424970.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135851 NZ_CP042545:2560853-2560956 [Klebsiella michiganensis]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT135851 NZ_CP042545:c2560963-2560795 [Klebsiella michiganensis]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
