Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2660695..2660896 | Replicon | chromosome |
| Accession | NZ_CP042540 | ||
| Organism | Enterobacter hormaechei strain C4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2660700..2660803 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2660695..2660896 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR758_RS12755 | 2656013..2656210 | - | 198 | WP_127850788.1 | hypothetical protein | - |
| FR758_RS12760 | 2656240..2656674 | - | 435 | WP_039270553.1 | hypothetical protein | - |
| FR758_RS12770 | 2658686..2659201 | - | 516 | WP_039270551.1 | hypothetical protein | - |
| FR758_RS12775 | 2659434..2659847 | - | 414 | WP_052685510.1 | hypothetical protein | - |
| FR758_RS12780 | 2659922..2660611 | + | 690 | WP_080338024.1 | tyrosine-type recombinase/integrase | - |
| - | 2660695..2660896 | + | 202 | - | - | Antitoxin |
| - | 2660700..2660803 | - | 104 | - | - | Toxin |
| FR758_RS12785 | 2660945..2661283 | - | 339 | WP_003859787.1 | YebY family protein | - |
| FR758_RS12790 | 2661300..2662169 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| FR758_RS12795 | 2662171..2662542 | - | 372 | WP_023296802.1 | CopC domain-containing protein YobA | - |
| FR758_RS12800 | 2662680..2662910 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| FR758_RS12805 | 2663022..2663672 | + | 651 | WP_015570289.1 | carbon-nitrogen hydrolase family protein | - |
| FR758_RS12810 | 2663697..2664359 | + | 663 | WP_039270549.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2636364..2666416 | 30052 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135833 NZ_CP042540:c2660803-2660700 [Enterobacter hormaechei]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 202 bp
>AT135833 NZ_CP042540:2660695-2660896 [Enterobacter hormaechei]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGCAAAAGTGGT
CTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
