Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1828502..1828648 | Replicon | chromosome |
| Accession | NZ_CP042530 | ||
| Organism | Klebsiella aerogenes strain C9 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1828537..1828640 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1828502..1828648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR830_RS08860 | 1823611..1825671 | + | 2061 | WP_063410479.1 | oligopeptidase B | - |
| FR830_RS08865 | 1825674..1826333 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| FR830_RS08870 | 1826413..1826643 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| FR830_RS08875 | 1826778..1827152 | + | 375 | WP_026612268.1 | CopC domain-containing protein YobA | - |
| FR830_RS08880 | 1827156..1828025 | + | 870 | WP_045360582.1 | copper homeostasis membrane protein CopD | - |
| FR830_RS08885 | 1828039..1828380 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1828502..1828648 | - | 147 | - | - | Antitoxin |
| - | 1828537..1828640 | + | 104 | - | - | Toxin |
| FR830_RS08890 | 1828768..1829721 | - | 954 | WP_080940469.1 | spore coat U domain-containing protein | - |
| FR830_RS08895 | 1829734..1832058 | - | 2325 | WP_045360584.1 | fimbrial biogenesis outer membrane usher protein | - |
| FR830_RS08900 | 1832061..1832810 | - | 750 | WP_045360586.1 | molecular chaperone | - |
| FR830_RS08905 | 1832828..1833346 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135816 NZ_CP042530:1828537-1828640 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 147 bp
>AT135816 NZ_CP042530:c1828648-1828502 [Klebsiella aerogenes]
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
TAATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAA
GTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
