Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1304709..1304851 | Replicon | chromosome |
| Accession | NZ_CP042517 | ||
| Organism | Citrobacter freundii strain E33 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1304744..1304847 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1304709..1304851 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR815_RS06290 | 1300881..1301267 | + | 387 | WP_151532620.1 | hypothetical protein | - |
| FR815_RS06295 | 1301430..1301783 | - | 354 | WP_137397182.1 | hypothetical protein | - |
| FR815_RS06300 | 1302077..1302322 | - | 246 | WP_115454751.1 | hypothetical protein | - |
| FR815_RS06310 | 1302979..1303353 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| FR815_RS06315 | 1303357..1304229 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| FR815_RS06320 | 1304250..1304588 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 1304709..1304851 | - | 143 | - | - | Antitoxin |
| - | 1304744..1304847 | + | 104 | - | - | Toxin |
| FR815_RS06325 | 1304925..1306010 | - | 1086 | WP_001129310.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FR815_RS06330 | 1305979..1306251 | - | 273 | WP_151532621.1 | excisionase | - |
| FR815_RS06335 | 1306315..1306557 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| FR815_RS06340 | 1306544..1307251 | - | 708 | WP_151532622.1 | hypothetical protein | - |
| FR815_RS06345 | 1307244..1307588 | - | 345 | WP_151532623.1 | hypothetical protein | - |
| FR815_RS06350 | 1307623..1308708 | - | 1086 | WP_151532624.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1230007..1369264 | 139257 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135773 NZ_CP042517:1304744-1304847 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT135773 NZ_CP042517:c1304851-1304709 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
