Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3244448..3244616 | Replicon | chromosome |
| Accession | NZ_CP042499 | ||
| Organism | Enterobacter sp. E76 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3244508..3244612 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3244448..3244616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR762_RS15450 | 3240837..3241505 | - | 669 | WP_151604506.1 | exodeoxyribonuclease X | - |
| FR762_RS15455 | 3241529..3242254 | - | 726 | WP_144132604.1 | carbon-nitrogen hydrolase family protein | - |
| FR762_RS15460 | 3242370..3242600 | - | 231 | WP_125291926.1 | DNA polymerase III subunit theta | - |
| FR762_RS15465 | 3242751..3243125 | + | 375 | WP_144132602.1 | CopC domain-containing protein YobA | - |
| FR762_RS15470 | 3243127..3244002 | + | 876 | WP_151604508.1 | copper homeostasis membrane protein CopD | - |
| FR762_RS15475 | 3244028..3244366 | + | 339 | WP_125291929.1 | YebY family protein | - |
| - | 3244448..3244616 | - | 169 | - | - | Antitoxin |
| - | 3244508..3244612 | + | 105 | - | - | Toxin |
| FR762_RS15480 | 3244699..3245781 | - | 1083 | WP_151604510.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FR762_RS15485 | 3245756..3246028 | - | 273 | WP_151604512.1 | excisionase | - |
| FR762_RS15490 | 3246093..3248678 | - | 2586 | WP_151604514.1 | 3'-5' exoribonuclease | - |
| FR762_RS15495 | 3248819..3249157 | - | 339 | WP_192798656.1 | Rrf2 family transcriptional regulator | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 3147469..3319534 | 172065 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 105 bp
>T135736 NZ_CP042499:3244508-3244612 [Enterobacter sp. E76]
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCGATTTCAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATA
CAGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 169 bp
>AT135736 NZ_CP042499:c3244616-3244448 [Enterobacter sp. E76]
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGTGGT
CCAAAAAAA
AGATAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTGAAATCGCCTTGCCCTTTAAGAATAGATTACGATGTCAGGTTTTCCAGTCCGCGACAAAAGTGGT
CCAAAAAAA
