Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2167848..2167990 | Replicon | chromosome |
| Accession | NZ_CP042478 | ||
| Organism | Citrobacter freundii strain C50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2167883..2167986 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2167848..2167990 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FR753_RS10620 | 2164020..2164406 | + | 387 | WP_151532620.1 | hypothetical protein | - |
| FR753_RS10625 | 2164569..2164922 | - | 354 | WP_137397182.1 | hypothetical protein | - |
| FR753_RS10630 | 2165216..2165461 | - | 246 | WP_115454751.1 | hypothetical protein | - |
| FR753_RS10640 | 2166118..2166492 | + | 375 | WP_003034928.1 | CopC domain-containing protein YobA | - |
| FR753_RS10645 | 2166496..2167368 | + | 873 | WP_032935389.1 | copper homeostasis membrane protein CopD | - |
| FR753_RS10650 | 2167389..2167727 | + | 339 | WP_003034934.1 | YebY family protein | - |
| - | 2167848..2167990 | - | 143 | - | - | Antitoxin |
| - | 2167883..2167986 | + | 104 | - | - | Toxin |
| FR753_RS10655 | 2168064..2169149 | - | 1086 | WP_001129310.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| FR753_RS10660 | 2169118..2169390 | - | 273 | WP_151532621.1 | excisionase | - |
| FR753_RS10665 | 2169454..2169696 | - | 243 | WP_001237028.1 | DUF4060 family protein | - |
| FR753_RS10670 | 2169683..2170390 | - | 708 | WP_151532622.1 | hypothetical protein | - |
| FR753_RS10675 | 2170383..2170727 | - | 345 | WP_151532623.1 | hypothetical protein | - |
| FR753_RS10680 | 2170762..2171847 | - | 1086 | WP_151532624.1 | recombinase RecT | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Genomic island | - | - | 2157679..2216034 | 58355 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135668 NZ_CP042478:2167883-2167986 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT135668 NZ_CP042478:c2167990-2167848 [Citrobacter freundii]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
