Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | yafQ-relB/YafQ-RelB |
Location | 3513855..3514384 | Replicon | chromosome |
Accession | NZ_CP042382 | ||
Organism | Pistricoccus aurantiacus strain CBA4606 |
Toxin (Protein)
Gene name | yafQ | Uniprot ID | - |
Locus tag | FGL86_RS16605 | Protein ID | WP_147185806.1 |
Coordinates | 3513855..3514127 (-) | Length | 91 a.a. |
Antitoxin (Protein)
Gene name | relB | Uniprot ID | - |
Locus tag | FGL86_RS16610 | Protein ID | WP_147185807.1 |
Coordinates | 3514127..3514384 (-) | Length | 86 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
FGL86_RS16580 | 3509204..3510847 | + | 1644 | WP_186764430.1 | antiporter | - |
FGL86_RS16585 | 3511060..3512415 | + | 1356 | WP_147185802.1 | NarK/NasA family nitrate transporter | - |
FGL86_RS16590 | 3512478..3512795 | - | 318 | WP_147185803.1 | carboxymuconolactone decarboxylase family protein | - |
FGL86_RS16595 | 3512852..3513235 | - | 384 | WP_147185804.1 | SirB2 family protein | - |
FGL86_RS16600 | 3513354..3513824 | + | 471 | WP_147185805.1 | hypothetical protein | - |
FGL86_RS16605 | 3513855..3514127 | - | 273 | WP_147185806.1 | type II toxin-antitoxin system YafQ family toxin | Toxin |
FGL86_RS16610 | 3514127..3514384 | - | 258 | WP_147185807.1 | type II toxin-antitoxin system RelB/DinJ family antitoxin | Antitoxin |
FGL86_RS16615 | 3514461..3515684 | - | 1224 | WP_147185808.1 | NnrS family protein | - |
FGL86_RS16620 | 3515712..3516893 | - | 1182 | WP_147185809.1 | NO-inducible flavohemoprotein | - |
FGL86_RS16625 | 3517084..3518151 | - | 1068 | WP_186764431.1 | metal-dependent hydrolase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 91 a.a. Molecular weight: 10728.43 Da Isoelectric Point: 10.5148
>T135646 WP_147185806.1 NZ_CP042382:c3514127-3513855 [Pistricoccus aurantiacus]
MLVPVRSSQFKRDVKRVKKRNKDMTKLRRLLGLLIEQKPLPETYLDHPLRGNWKSYRDAHIEPDWLLIYRIEGNESQLAR
TGTHADLFTE
MLVPVRSSQFKRDVKRVKKRNKDMTKLRRLLGLLIEQKPLPETYLDHPLRGNWKSYRDAHIEPDWLLIYRIEGNESQLAR
TGTHADLFTE
Download Length: 273 bp
>T135646 NZ_CP042382:c3514127-3513855 [Pistricoccus aurantiacus]
ATGCTGGTGCCGGTTCGCTCCAGCCAATTCAAGCGTGACGTGAAGCGCGTTAAAAAGCGCAACAAGGACATGACCAAGTT
ACGCCGATTGCTTGGGTTGCTGATCGAGCAAAAGCCTTTGCCGGAGACTTATCTTGATCATCCCTTGCGAGGAAATTGGA
AAAGCTATCGGGATGCCCATATCGAGCCTGACTGGTTACTGATCTATCGCATCGAAGGTAATGAGTCACAACTGGCTAGA
ACCGGGACCCATGCTGATTTGTTCACTGAGTGA
ATGCTGGTGCCGGTTCGCTCCAGCCAATTCAAGCGTGACGTGAAGCGCGTTAAAAAGCGCAACAAGGACATGACCAAGTT
ACGCCGATTGCTTGGGTTGCTGATCGAGCAAAAGCCTTTGCCGGAGACTTATCTTGATCATCCCTTGCGAGGAAATTGGA
AAAGCTATCGGGATGCCCATATCGAGCCTGACTGGTTACTGATCTATCGCATCGAAGGTAATGAGTCACAACTGGCTAGA
ACCGGGACCCATGCTGATTTGTTCACTGAGTGA
Antitoxin
Download Length: 86 a.a. Molecular weight: 9344.74 Da Isoelectric Point: 4.8411
>AT135646 WP_147185807.1 NZ_CP042382:c3514384-3514127 [Pistricoccus aurantiacus]
MSTDTVVRARIDSETKAKATEALDAMGLSVSDAIRLLMLRIAEEKRLPFTVQVPSATTAKAMEELESGKGKRFDDAETLF
KDLNI
MSTDTVVRARIDSETKAKATEALDAMGLSVSDAIRLLMLRIAEEKRLPFTVQVPSATTAKAMEELESGKGKRFDDAETLF
KDLNI
Download Length: 258 bp
>AT135646 NZ_CP042382:c3514384-3514127 [Pistricoccus aurantiacus]
ATGAGTACCGATACCGTTGTCAGAGCCCGCATCGACAGTGAGACGAAAGCCAAGGCCACCGAGGCGCTTGACGCCATGGG
GCTGTCCGTCTCCGATGCCATTCGATTGTTGATGCTGAGAATCGCCGAGGAAAAACGCCTGCCTTTTACCGTGCAGGTGC
CAAGCGCCACCACGGCCAAGGCGATGGAAGAGTTGGAGAGTGGCAAGGGAAAGCGTTTCGATGATGCCGAGACCCTGTTC
AAGGATCTAAATATCTGA
ATGAGTACCGATACCGTTGTCAGAGCCCGCATCGACAGTGAGACGAAAGCCAAGGCCACCGAGGCGCTTGACGCCATGGG
GCTGTCCGTCTCCGATGCCATTCGATTGTTGATGCTGAGAATCGCCGAGGAAAAACGCCTGCCTTTTACCGTGCAGGTGC
CAAGCGCCACCACGGCCAAGGCGATGGAAGAGTTGGAGAGTGGCAAGGGAAAGCGTTTCGATGATGCCGAGACCCTGTTC
AAGGATCTAAATATCTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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