Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1940536..1940807 | Replicon | chromosome |
| Accession | NZ_CP042352 | ||
| Organism | Escherichia coli strain RM9513 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1940574..1940677 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1940536..1940807 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FS836_RS09715 | 1937693..1939132 | + | 1440 | WP_061344305.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FS836_RS09720 | 1939250..1939486 | + | 237 | WP_001295499.1 | YebV family protein | - |
| FS836_RS09725 | 1939591..1939782 | + | 192 | WP_001296140.1 | YebW family protein | - |
| FS836_RS09730 | 1939783..1940439 | - | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| - | 1940536..1940807 | + | 272 | - | - | Antitoxin |
| - | 1940574..1940677 | - | 104 | - | - | Toxin |
| FS836_RS09735 | 1940835..1941176 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FS836_RS09740 | 1941189..1942061 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| FS836_RS09745 | 1942065..1942439 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| FS836_RS09750 | 1942578..1942808 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FS836_RS09755 | 1942910..1943566 | + | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| FS836_RS09760 | 1943590..1944252 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135524 NZ_CP042352:c1940677-1940574 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT135524 NZ_CP042352:1940536-1940807 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
