Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 310395..310923 Replicon chromosome
Accession NZ_CP042331
Organism Bosea sp. F3-2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FQV39_RS01560 Protein ID WP_149128707.1
Coordinates 310630..310923 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FQV39_RS01555 Protein ID WP_149128706.1
Coordinates 310395..310637 (+) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FQV39_RS01535 307210..307455 - 246 WP_149128702.1 hypothetical protein -
FQV39_RS01540 307452..308219 - 768 WP_149128703.1 SDR family oxidoreductase -
FQV39_RS01545 308864..309301 + 438 WP_149128704.1 DUF1489 family protein -
FQV39_RS01550 309445..310125 - 681 WP_149128705.1 DUF2270 domain-containing protein -
FQV39_RS01555 310395..310637 + 243 WP_149128706.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
FQV39_RS01560 310630..310923 + 294 WP_149128707.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FQV39_RS01565 310950..311762 - 813 WP_149133593.1 pantoate--beta-alanine ligase -
FQV39_RS01570 311968..312633 + 666 WP_149133594.1 VWA domain-containing protein -
FQV39_RS01575 312636..313349 + 714 WP_187640297.1 DnaJ domain-containing protein -
FQV39_RS01580 313406..315073 - 1668 WP_149128709.1 SPOR domain-containing protein -
FQV39_RS01585 315367..315714 + 348 WP_149128710.1 phasin family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10918.53 Da        Isoelectric Point: 9.4785

>T135400 WP_149128707.1 NZ_CP042331:310630-310923 [Bosea sp. F3-2]
MVEGHYRLSPLALADLEVIWSWAARRWSVEQAESYHAALVAAFEGLARGAKKGRPVDIRTGYCKYAVGAHLVSYRQSSAG
IDVIRILHQRMDVDRHL

Download         Length: 294 bp

>T135400 NZ_CP042331:310630-310923 [Bosea sp. F3-2]
ATGGTTGAAGGGCACTATCGGCTTTCGCCGCTCGCCCTTGCCGATCTTGAGGTGATCTGGTCCTGGGCGGCCCGGCGCTG
GTCAGTCGAACAGGCCGAAAGCTATCACGCCGCTCTCGTTGCTGCCTTCGAGGGGCTGGCACGTGGTGCCAAGAAGGGGC
GGCCGGTCGATATTCGCACCGGCTACTGCAAGTACGCGGTCGGCGCGCACCTTGTCTCTTATCGTCAGTCATCCGCCGGG
ATCGACGTCATCCGCATTCTGCACCAGCGGATGGATGTCGATCGGCATCTCTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8829.81 Da        Isoelectric Point: 6.7251

>AT135400 WP_149128706.1 NZ_CP042331:310395-310637 [Bosea sp. F3-2]
MAKNTSISLGDHFSTFVGQQVKSGRYGSASDVVRAGLRLLEEHEARVQTLRDALVAGEESGEPAPFDNDAFLRRMRERHG

Download         Length: 243 bp

>AT135400 NZ_CP042331:310395-310637 [Bosea sp. F3-2]
ATGGCCAAGAATACGTCGATCTCGCTCGGAGATCATTTCAGCACCTTCGTCGGCCAACAGGTCAAAAGCGGTCGCTACGG
CTCGGCGAGCGATGTCGTGCGTGCGGGGCTGCGGCTGCTTGAGGAGCATGAGGCGCGCGTCCAGACGCTGCGAGACGCTT
TGGTAGCCGGAGAAGAATCGGGCGAGCCCGCACCGTTCGACAACGACGCCTTCCTGAGACGAATGCGCGAACGGCATGGT
TGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References