Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 310395..310923 Replicon chromosome
Accession NZ_CP042331
Organism Bosea sp. F3-2

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FQV39_RS01560 Protein ID WP_149128707.1
Coordinates 310630..310923 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FQV39_RS01555 Protein ID WP_149128706.1
Coordinates 310395..310637 (+) Length 81 a.a.

Genomic Context

FQV39_RS01545FQV39_RS01555FQV39_RS01560FQV39_RS01570FQV39_RS01575FQV39_RS01585FQV39_RS01535FQV39_RS01540FQV39_RS01550FQV39_RS01565FQV39_RS01580
Location: 308864..309301 (438 bp)
Type: Others
Protein ID: WP_149128704.1
Location: 310395..310637 (243 bp)
Type: Antitoxin
Protein ID: WP_149128706.1
Location: 310630..310923 (294 bp)
Type: Toxin
Protein ID: WP_149128707.1
Location: 311968..312633 (666 bp)
Type: Others
Protein ID: WP_149133594.1
Location: 312636..313349 (714 bp)
Type: Others
Protein ID: WP_187640297.1
Location: 315367..315714 (348 bp)
Type: Others
Protein ID: WP_149128710.1
Location: 307210..307455 (246 bp)
Type: Others
Protein ID: WP_149128702.1
Location: 307452..308219 (768 bp)
Type: Others
Protein ID: WP_149128703.1
Location: 309445..310125 (681 bp)
Type: Others
Protein ID: WP_149128705.1
Location: 310950..311762 (813 bp)
Type: Others
Protein ID: WP_149133593.1
Location: 313406..315073 (1668 bp)
Type: Others
Protein ID: WP_149128709.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FQV39_RS01535307210..307455-246WP_149128702.1hypothetical protein-
FQV39_RS01540307452..308219-768WP_149128703.1SDR family oxidoreductase-
FQV39_RS01545308864..309301+438WP_149128704.1DUF1489 family protein-
FQV39_RS01550309445..310125-681WP_149128705.1DUF2270 domain-containing protein-
FQV39_RS01555310395..310637+243WP_149128706.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
FQV39_RS01560310630..310923+294WP_149128707.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FQV39_RS01565310950..311762-813WP_149133593.1pantoate--beta-alanine ligase-
FQV39_RS01570311968..312633+666WP_149133594.1VWA domain-containing protein-
FQV39_RS01575312636..313349+714WP_187640297.1DnaJ domain-containing protein-
FQV39_RS01580313406..315073-1668WP_149128709.1SPOR domain-containing protein-
FQV39_RS01585315367..315714+348WP_149128710.1phasin family protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-92)

Antitoxin

Antitoxin ParD

(1-79)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10918.53 Da        Isoelectric Point: 9.4785

>T135400 WP_149128707.1 NZ_CP042331:310630-310923 [Bosea sp. F3-2]
MVEGHYRLSPLALADLEVIWSWAARRWSVEQAESYHAALVAAFEGLARGAKKGRPVDIRTGYCKYAVGAHLVSYRQSSAG
IDVIRILHQRMDVDRHL

Download         Length: 294 bp

>T135400 NZ_CP042331:310630-310923 [Bosea sp. F3-2]
ATGGTTGAAGGGCACTATCGGCTTTCGCCGCTCGCCCTTGCCGATCTTGAGGTGATCTGGTCCTGGGCGGCCCGGCGCTG
GTCAGTCGAACAGGCCGAAAGCTATCACGCCGCTCTCGTTGCTGCCTTCGAGGGGCTGGCACGTGGTGCCAAGAAGGGGC
GGCCGGTCGATATTCGCACCGGCTACTGCAAGTACGCGGTCGGCGCGCACCTTGTCTCTTATCGTCAGTCATCCGCCGGG
ATCGACGTCATCCGCATTCTGCACCAGCGGATGGATGTCGATCGGCATCTCTGA

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8829.81 Da        Isoelectric Point: 6.7251

>AT135400 WP_149128706.1 NZ_CP042331:310395-310637 [Bosea sp. F3-2]
MAKNTSISLGDHFSTFVGQQVKSGRYGSASDVVRAGLRLLEEHEARVQTLRDALVAGEESGEPAPFDNDAFLRRMRERHG

Download         Length: 243 bp

>AT135400 NZ_CP042331:310395-310637 [Bosea sp. F3-2]
ATGGCCAAGAATACGTCGATCTCGCTCGGAGATCATTTCAGCACCTTCGTCGGCCAACAGGTCAAAAGCGGTCGCTACGG
CTCGGCGAGCGATGTCGTGCGTGCGGGGCTGCGGCTGCTTGAGGAGCATGAGGCGCGCGTCCAGACGCTGCGAGACGCTT
TGGTAGCCGGAGAAGAATCGGGCGAGCCCGCACCGTTCGACAACGACGCCTTCCTGAGACGAATGCGCGAACGGCATGGT
TGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References