Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4514752..4514897 | Replicon | chromosome |
| Accession | NZ_CP042321 | ||
| Organism | Klebsiella pneumoniae strain 1-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4514759..4514861 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4514752..4514897 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRX36_RS22305 | 4510284..4511717 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FRX36_RS22310 | 4511833..4512072 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FRX36_RS22315 | 4512170..4512361 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FRX36_RS22320 | 4512358..4513011 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| FRX36_RS22325 | 4513168..4514136 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FRX36_RS22330 | 4514241..4514384 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4514752..4514897 | + | 146 | - | - | Antitoxin |
| - | 4514759..4514861 | - | 103 | - | - | Toxin |
| FRX36_RS22335 | 4515020..4515358 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FRX36_RS22340 | 4515375..4516244 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| FRX36_RS22345 | 4516248..4516622 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FRX36_RS22350 | 4516735..4516965 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FRX36_RS22355 | 4517044..4517703 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FRX36_RS22360 | 4517707..4519767 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135384 NZ_CP042321:c4514861-4514759 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135384 NZ_CP042321:4514752-4514897 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
