Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3910320..3910467 | Replicon | chromosome |
| Accession | NZ_CP042319 | ||
| Organism | Klebsiella quasipneumoniae strain 68-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3910324..3910426 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3910320..3910467 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM29_RS18995 | 3905846..3907279 | + | 1434 | WP_179417116.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM29_RS19000 | 3907396..3907635 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM29_RS19005 | 3907733..3907924 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM29_RS19010 | 3907921..3908574 | - | 654 | WP_032456309.1 | protein-serine/threonine phosphatase | - |
| FLM29_RS19015 | 3908731..3909699 | + | 969 | WP_004203383.1 | VirK/YbjX family protein | - |
| FLM29_RS19020 | 3909803..3909946 | + | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| - | 3910320..3910467 | + | 148 | - | - | Antitoxin |
| - | 3910324..3910426 | - | 103 | - | - | Toxin |
| FLM29_RS19025 | 3910585..3910923 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM29_RS19030 | 3910940..3911809 | - | 870 | WP_179416671.1 | copper homeostasis membrane protein CopD | - |
| FLM29_RS19035 | 3911813..3912187 | - | 375 | WP_004203386.1 | CopC domain-containing protein YobA | - |
| FLM29_RS19040 | 3912300..3912530 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM29_RS19045 | 3912609..3913268 | + | 660 | WP_004203387.1 | exodeoxyribonuclease X | - |
| FLM29_RS19050 | 3913272..3915332 | - | 2061 | WP_004203388.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135348 NZ_CP042319:c3910426-3910324 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT135348 NZ_CP042319:3910320-3910467 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
