Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4512908..4513053 | Replicon | chromosome |
| Accession | NZ_CP042318 | ||
| Organism | Klebsiella pneumoniae strain 46-16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4512915..4513017 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4512908..4513053 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM28_RS22275 | 4508440..4509873 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM28_RS22280 | 4509989..4510228 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM28_RS22285 | 4510326..4510517 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM28_RS22290 | 4510514..4511167 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| FLM28_RS22295 | 4511324..4512292 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FLM28_RS22300 | 4512397..4512540 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4512908..4513053 | + | 146 | - | - | Antitoxin |
| - | 4512915..4513017 | - | 103 | - | - | Toxin |
| FLM28_RS22305 | 4513176..4513514 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM28_RS22310 | 4513531..4514400 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| FLM28_RS22315 | 4514404..4514778 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FLM28_RS22320 | 4514891..4515121 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM28_RS22325 | 4515200..4515859 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FLM28_RS22330 | 4515863..4517923 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135337 NZ_CP042318:c4513017-4512915 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135337 NZ_CP042318:4512908-4513053 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
