Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4230601..4230746 | Replicon | chromosome |
| Accession | NZ_CP042315 | ||
| Organism | Klebsiella pneumoniae strain 89-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4230608..4230710 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4230601..4230746 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM33_RS20705 | 4226133..4227566 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM33_RS20710 | 4227682..4227921 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM33_RS20715 | 4228019..4228210 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM33_RS20720 | 4228207..4228860 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| FLM33_RS20725 | 4229017..4229985 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FLM33_RS20730 | 4230090..4230233 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4230601..4230746 | + | 146 | - | - | Antitoxin |
| - | 4230608..4230710 | - | 103 | - | - | Toxin |
| FLM33_RS20735 | 4230869..4231207 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM33_RS20740 | 4231224..4232093 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| FLM33_RS20745 | 4232097..4232471 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FLM33_RS20750 | 4232584..4232814 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM33_RS20755 | 4232893..4233552 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| FLM33_RS20760 | 4233556..4235616 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135302 NZ_CP042315:c4230710-4230608 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135302 NZ_CP042315:4230601-4230746 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
