Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4208915..4209060 | Replicon | chromosome |
| Accession | NZ_CP042314 | ||
| Organism | Klebsiella pneumoniae strain 90-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4208922..4209024 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4208915..4209060 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM34_RS20425 | 4204447..4205880 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM34_RS20430 | 4205996..4206235 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM34_RS20435 | 4206333..4206524 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM34_RS20440 | 4206521..4207174 | - | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| FLM34_RS20445 | 4207331..4208299 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| FLM34_RS20450 | 4208404..4208547 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4208915..4209060 | + | 146 | - | - | Antitoxin |
| - | 4208922..4209024 | - | 103 | - | - | Toxin |
| FLM34_RS20455 | 4209183..4209521 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM34_RS20460 | 4209538..4210407 | - | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| FLM34_RS20465 | 4210411..4210785 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FLM34_RS20470 | 4210898..4211128 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM34_RS20475 | 4211207..4211866 | + | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| FLM34_RS20480 | 4211870..4213930 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135285 NZ_CP042314:c4209024-4208922 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135285 NZ_CP042314:4208915-4209060 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
