Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4511744..4511889 | Replicon | chromosome |
| Accession | NZ_CP042309 | ||
| Organism | Klebsiella pneumoniae strain 109-17 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4511751..4511853 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4511744..4511889 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FLM40_RS22255 | 4507276..4508709 | + | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FLM40_RS22260 | 4508825..4509064 | + | 240 | WP_002911393.1 | YebV family protein | - |
| FLM40_RS22265 | 4509162..4509353 | + | 192 | WP_002911395.1 | YebW family protein | - |
| FLM40_RS22270 | 4509350..4510003 | - | 654 | WP_002911396.1 | protein-serine/threonine phosphatase | - |
| FLM40_RS22275 | 4510160..4511128 | + | 969 | WP_179373634.1 | VirK/YbjX family protein | - |
| FLM40_RS22280 | 4511233..4511376 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 4511744..4511889 | + | 146 | - | - | Antitoxin |
| - | 4511751..4511853 | - | 103 | - | - | Toxin |
| FLM40_RS22285 | 4512012..4512350 | - | 339 | WP_002911404.1 | YebY family protein | - |
| FLM40_RS22290 | 4512367..4513236 | - | 870 | WP_004151447.1 | copper homeostasis membrane protein CopD | - |
| FLM40_RS22295 | 4513240..4513614 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| FLM40_RS22300 | 4513727..4513957 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| FLM40_RS22305 | 4514036..4514695 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| FLM40_RS22310 | 4514699..4516759 | - | 2061 | WP_004151449.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T135232 NZ_CP042309:c4511853-4511751 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT135232 NZ_CP042309:4511744-4511889 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
