Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2202835..2203106 | Replicon | chromosome |
| Accession | NZ_CP042298 | ||
| Organism | Escherichia coli strain RM9088 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2202873..2202976 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2202835..2203106 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FRV13_RS12700 | 2199992..2201431 | + | 1440 | WP_024176540.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| FRV13_RS12705 | 2201549..2201785 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FRV13_RS12710 | 2201890..2202081 | + | 192 | WP_001313035.1 | YebW family protein | - |
| FRV13_RS12715 | 2202082..2202738 | - | 657 | WP_047084915.1 | protein-serine/threonine phosphatase | - |
| - | 2202835..2203106 | + | 272 | - | - | Antitoxin |
| - | 2202873..2202976 | - | 104 | - | - | Toxin |
| FRV13_RS12720 | 2203134..2203475 | - | 342 | WP_000976472.1 | YebY family protein | - |
| FRV13_RS12725 | 2203488..2204360 | - | 873 | WP_047084914.1 | copper homeostasis membrane protein CopD | - |
| FRV13_RS12730 | 2204364..2204738 | - | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| FRV13_RS12735 | 2204877..2205107 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FRV13_RS12740 | 2205209..2205865 | + | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| FRV13_RS12745 | 2205889..2206551 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T135175 NZ_CP042298:c2202976-2202873 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT135175 NZ_CP042298:2202835-2203106 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
