Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/darT(toxin)
Location 2208850..2210624 Replicon chromosome
Accession NZ_CP042218
Organism Luteimonas granuli strain Gr-4

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag FPZ22_RS10180 Protein ID WP_144892679.1
Coordinates 2208850..2209503 (+) Length 218 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag FPZ22_RS10185 Protein ID WP_144892681.1
Coordinates 2209500..2210624 (+) Length 375 a.a.

Genomic Context

FPZ22_RS10170FPZ22_RS10175FPZ22_RS10180FPZ22_RS10185FPZ22_RS10190FPZ22_RS10195
Location: 2204951..2208103 (3153 bp)
Type: Others
Protein ID: WP_144892675.1
Location: 2208090..2208857 (768 bp)
Type: Others
Protein ID: WP_144892677.1
Location: 2208850..2209503 (654 bp)
Type: Toxin
Protein ID: WP_144892679.1
Location: 2209500..2210624 (1125 bp)
Type: Antitoxin
Protein ID: WP_144892681.1
Location: 2210570..2212411 (1842 bp)
Type: Others
Protein ID: WP_144892683.1
Location: 2212589..2213200 (612 bp)
Type: Others
Protein ID: WP_144892685.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FPZ22_RS101702204951..2208103+3153WP_144892675.1type I restriction endonuclease subunit R-
FPZ22_RS101752208090..2208857+768WP_144892677.1M48 family metallopeptidase-
FPZ22_RS101802208850..2209503+654WP_144892679.1DUF4433 domain-containing proteinToxin
FPZ22_RS101852209500..2210624+1125WP_144892681.1macro domain-containing proteinAntitoxin
FPZ22_RS101902210570..2212411-1842WP_144892683.1DNA helicase RecQ-
FPZ22_RS101952212589..2213200-612WP_144892685.1DNA starvation/stationary phase protection protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

ssDNA thymidine ADP-ribosyltransferase, DarT

(16-216)

Antitoxin

Macro domain

(18-128)


Sequences

Toxin        


Download         Length: 218 a.a.        Molecular weight: 24992.49 Da        Isoelectric Point: 8.4732

>T134994 WP_144892679.1 NZ_CP042218:2208850-2209503 [Luteimonas granuli]
VAERYPNLNPDKALIWRIVHRDNLPWILDNGLHCGNGGVRAPGWISIGSPELIEKRASHPVPLPPGGTLNDYVPFYFTPF
SPMLRNIHTGWGGVRRRPNDEIVILVSSLHHVAAQGRPFLFTDSHAYYQWANFYADLADLGKIDWPLLQARDFRRDPDDP
AKFERYQAEALVHRHLPIDGLRGIVCYTDHLKQVLERQLQARNLDLPVFARTGWYFR

Download         Length: 654 bp

>T134994 NZ_CP042218:2208850-2209503 [Luteimonas granuli]
GTGGCTGAGCGCTATCCCAATCTCAATCCGGACAAAGCGCTGATCTGGCGCATCGTCCATCGTGACAACCTGCCGTGGAT
TCTGGACAACGGCCTTCACTGCGGTAACGGCGGCGTGCGGGCTCCGGGCTGGATCAGCATCGGGAGTCCGGAGCTGATCG
AGAAGCGCGCCAGCCATCCAGTACCACTGCCGCCGGGCGGGACCTTGAACGACTACGTGCCGTTCTACTTCACCCCGTTC
TCGCCGATGTTGCGCAATATCCATACGGGCTGGGGTGGCGTGCGGCGGCGGCCCAACGATGAGATCGTGATTCTCGTCTC
CAGCCTGCATCATGTCGCCGCGCAGGGCCGGCCTTTCCTGTTCACCGACAGTCACGCCTACTACCAGTGGGCAAACTTTT
ACGCCGACCTGGCTGACCTCGGCAAGATCGACTGGCCCTTGCTTCAGGCGAGGGATTTTCGCCGCGACCCGGACGACCCG
GCCAAGTTCGAGCGTTACCAGGCTGAGGCGCTGGTCCACCGGCACTTGCCGATCGACGGCTTGCGCGGCATCGTGTGCTA
CACGGACCATTTGAAGCAGGTCCTCGAGCGTCAACTCCAGGCCCGCAACCTGGACCTGCCGGTCTTCGCCCGTACCGGGT
GGTATTTCCGATGA

Antitoxin


Download         Length: 375 a.a.        Molecular weight: 41860.13 Da        Isoelectric Point: 9.2254

>AT134994 WP_144892681.1 NZ_CP042218:2209500-2210624 [Luteimonas granuli]
MITFTQGNLLEARAEALVNTVNTVGVMGKGIALMFKERFPENFRRYAAACKAKEVRVGRMFITEVNELGGPRWIINFPTK
QHWRGNSRMEWITEGLQDLRRFLVENQVKSVAIPPLGAGNGGLEWVQVRPHVETMLAGLETEILVFEPTGNYQNVAKRTG
VEKLTPARALIAELVRRYWVLGMECSLLEIQKLAWFLERNIEQAGLTPLELRFVPHKYGPYADRLRHLLDGLDGSYLHSV
KRIGDADPLDVIWFDDRRTSFVQAYLKSEAKDYAPALEATVALIDGFESPFGMELLASVDWLLVKDRVTPTVPAVREGLR
HWHGGPGAAERKGRLFDDRALGIALERLGPQPRRRSTQAASVAASATTSSTSSP

Download         Length: 1125 bp

>AT134994 NZ_CP042218:2209500-2210624 [Luteimonas granuli]
ATGATCACGTTCACTCAAGGCAATCTGCTGGAGGCCCGCGCCGAGGCGCTGGTTAATACCGTCAACACCGTGGGTGTGAT
GGGGAAGGGCATCGCGCTGATGTTCAAAGAGCGCTTCCCCGAGAACTTCCGTCGCTATGCCGCTGCGTGCAAGGCCAAGG
AGGTGCGGGTGGGTAGGATGTTCATCACCGAGGTCAACGAGCTGGGCGGTCCGCGCTGGATCATCAATTTTCCAACCAAG
CAGCATTGGCGCGGAAATTCGCGTATGGAGTGGATCACGGAGGGCCTGCAGGACCTGCGGCGGTTCCTGGTCGAGAATCA
GGTCAAGTCAGTCGCTATCCCGCCACTTGGGGCCGGTAACGGCGGCTTGGAATGGGTGCAGGTACGACCACACGTCGAAA
CAATGCTGGCTGGCCTGGAGACCGAGATCCTCGTGTTCGAGCCCACCGGCAATTACCAGAATGTGGCCAAGCGTACCGGG
GTCGAGAAGCTCACGCCGGCCCGCGCGCTGATCGCGGAGCTGGTGCGCCGCTATTGGGTGCTGGGCATGGAATGCAGCCT
GCTGGAGATCCAGAAGCTGGCCTGGTTCCTCGAACGCAATATCGAGCAGGCGGGCCTGACGCCCCTGGAGCTGCGCTTTG
TACCGCACAAGTACGGTCCTTACGCCGACCGTCTGCGACATCTGCTGGATGGCCTGGATGGCAGCTATCTGCACAGTGTC
AAGCGCATCGGTGATGCCGATCCACTGGACGTGATCTGGTTCGATGATAGACGCACAAGCTTCGTCCAGGCCTACCTGAA
GAGTGAGGCCAAGGATTACGCGCCGGCACTGGAAGCCACGGTGGCCTTGATCGACGGCTTCGAGTCGCCTTTCGGCATGG
AGCTTCTGGCGTCTGTGGACTGGCTGCTGGTGAAAGACCGCGTTACCCCGACCGTGCCTGCCGTACGCGAAGGCCTACGT
CACTGGCATGGCGGTCCCGGTGCGGCGGAGCGGAAGGGCAGGTTGTTCGATGATCGTGCCCTGGGTATTGCGCTGGAACG
GTTGGGCCCTCAGCCGCGCCGGCGCTCGACTCAGGCGGCGTCCGTTGCCGCTTCCGCAACCACGTCCAGCACCTCGTCCC
CGTAA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References