Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 1764146..1764633 Replicon chromosome
Accession NZ_CP042218
Organism Luteimonas granuli strain Gr-4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag FPZ22_RS08100 Protein ID WP_144892003.1
Coordinates 1764146..1764466 (-) Length 107 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag FPZ22_RS08105 Protein ID WP_144894057.1
Coordinates 1764454..1764633 (-) Length 60 a.a.

Genomic Context

FPZ22_RS08075FPZ22_RS08080FPZ22_RS08085FPZ22_RS08090FPZ22_RS08095FPZ22_RS08100FPZ22_RS08105FPZ22_RS08110FPZ22_RS08115FPZ22_RS08120FPZ22_RS08125
Location: 1759201..1759809 (609 bp)
Type: Others
Protein ID: WP_144891993.1
Location: 1759806..1762241 (2436 bp)
Type: Others
Protein ID: WP_144891995.1
Location: 1762238..1762684 (447 bp)
Type: Others
Protein ID: WP_144891997.1
Location: 1762692..1763486 (795 bp)
Type: Others
Protein ID: WP_144891999.1
Location: 1763502..1764110 (609 bp)
Type: Others
Protein ID: WP_144892001.1
Location: 1764146..1764466 (321 bp)
Type: Toxin
Protein ID: WP_144892003.1
Location: 1764454..1764633 (180 bp)
Type: Antitoxin
Protein ID: WP_144894057.1
Location: 1764716..1765492 (777 bp)
Type: Others
Protein ID: WP_144891716.1
Location: 1765489..1766502 (1014 bp)
Type: Others
Protein ID: WP_144891714.1
Location: 1766593..1766664 (72 bp)
Type: Others
Protein ID: Protein_1611
Location: 1767604..1767918 (315 bp)
Type: Others
Protein ID: WP_144892005.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FPZ22_RS080751759201..1759809+609WP_144891993.1fatty acyl CoA synthetase-
FPZ22_RS080801759806..1762241+2436WP_144891995.1MMPL family transporter-
FPZ22_RS080851762238..1762684+447WP_144891997.1phosphotransferase-
FPZ22_RS080901762692..1763486+795WP_144891999.13-oxoacyl-ACP reductase FabG-
FPZ22_RS080951763502..1764110-609WP_144892001.1cold shock and DUF1294 domain-containing protein-
FPZ22_RS081001764146..1764466-321WP_144892003.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FPZ22_RS081051764454..1764633-180WP_144894057.1prevent-host-death family proteinAntitoxin
FPZ22_RS081101764716..1765492-777WP_144891716.1IS21-like element helper ATPase IstB-
FPZ22_RS081151765489..1766502-1014WP_144891714.1IS21 family transposase-
FPZ22_RS081201766593..1766664-72Protein_1611type II toxin-antitoxin system prevent-host-death family antitoxin-
FPZ22_RS081251767604..1767918-315WP_144892005.1hypothetical protein-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-flankIS/Tn--1764716..1765492776


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 107 a.a.        Molecular weight: 12344.18 Da        Isoelectric Point: 10.0533

>T134993 WP_144892003.1 NZ_CP042218:c1764466-1764146 [Luteimonas granuli]
MAEIVWSESVLSDLDAIADYIALEDRVAAAERVKRIFAHVEQLADHPESGSRPRELGRSRYRQVVEPPCRVFYRYDGHKV
FIPYVMRAERLLRKGRLAFRSRQAKA

Download         Length: 321 bp

>T134993 NZ_CP042218:c1764466-1764146 [Luteimonas granuli]
ATGGCTGAAATAGTCTGGTCAGAATCAGTCCTGAGCGACCTGGATGCCATTGCCGACTACATCGCGTTGGAGGACCGGGT
TGCTGCCGCGGAGCGGGTCAAGCGCATCTTTGCTCATGTCGAGCAACTCGCTGATCATCCAGAAAGCGGCAGCCGCCCAC
GGGAGCTTGGGCGGTCACGGTATCGGCAGGTCGTGGAGCCGCCCTGTCGCGTCTTCTATCGCTACGATGGGCACAAGGTG
TTCATCCCGTACGTCATGCGCGCGGAGCGTTTGCTTCGCAAGGGGCGGCTGGCGTTTCGTTCTCGACAGGCGAAGGCCTG
A

Antitoxin


Download         Length: 60 a.a.        Molecular weight: 6643.78 Da        Isoelectric Point: 10.2098

>AT134993 WP_144894057.1 NZ_CP042218:c1764633-1764454 [Luteimonas granuli]
ILITQHGLPSAYLVDVESFELMLQRMTVLEGIARGEQAIAEGRVATHAQARKRLARWLK

Download         Length: 180 bp

>AT134993 NZ_CP042218:c1764633-1764454 [Luteimonas granuli]
ATCCTCATCACGCAGCACGGCCTGCCGAGCGCGTACCTCGTGGACGTCGAGAGCTTCGAGCTCATGCTGCAGCGCATGAC
CGTGCTCGAGGGAATCGCACGCGGAGAGCAGGCGATTGCCGAGGGTCGCGTGGCAACTCATGCACAAGCCAGGAAGCGCC
TTGCCAGATGGCTGAAATAG

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References