Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/ParE-RHH
Location 803381..803916 Replicon chromosome
Accession NZ_CP042218
Organism Luteimonas granuli strain Gr-4

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag FPZ22_RS03650 Protein ID WP_144890447.1
Coordinates 803617..803916 (+) Length 100 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag FPZ22_RS03645 Protein ID WP_144890444.1
Coordinates 803381..803620 (+) Length 80 a.a.

Genomic Context

FPZ22_RS03645FPZ22_RS03650FPZ22_RS03685FPZ22_RS03690FPZ22_RS03695FPZ22_RS03630FPZ22_RS03635FPZ22_RS03640FPZ22_RS03655FPZ22_RS03660FPZ22_RS03665FPZ22_RS03670FPZ22_RS03675FPZ22_RS13570
Location: 803381..803620 (240 bp)
Type: Antitoxin
Protein ID: WP_144890444.1
Location: 803617..803916 (300 bp)
Type: Toxin
Protein ID: WP_144890447.1
Location: 807082..807395 (314 bp)
Type: Others
Protein ID: Protein_725
Location: 807392..808213 (822 bp)
Type: Others
Protein ID: WP_210412727.1
Location: 808241..808471 (231 bp)
Type: Others
Protein ID: Protein_727
Location: 800356..801837 (1482 bp)
Type: Others
Protein ID: WP_144890438.1
Location: 801845..802573 (729 bp)
Type: Others
Protein ID: WP_168198924.1
Location: 802570..803190 (621 bp)
Type: Others
Protein ID: WP_144890441.1
Location: 803927..804526 (600 bp)
Type: Others
Protein ID: WP_144890450.1
Location: 804513..804716 (204 bp)
Type: Others
Protein ID: WP_144890453.1
Location: 804813..805196 (384 bp)
Type: Others
Protein ID: WP_144890456.1
Location: 805198..806298 (1101 bp)
Type: Others
Protein ID: WP_144890459.1
Location: 806308..806718 (411 bp)
Type: Others
Protein ID: WP_210412729.1
Location: 806827..807000 (174 bp)
Type: Others
Protein ID: WP_168198925.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
FPZ22_RS03630800356..801837-1482WP_144890438.1DNA polymerase Y family protein-
FPZ22_RS03635801845..802573-729WP_168198924.1translesion DNA synthesis-associated protein ImuA-
FPZ22_RS03640802570..803190-621WP_144890441.1transcriptional repressor LexA-
FPZ22_RS03645803381..803620+240WP_144890444.1type II toxin-antitoxin system ParD family antitoxinAntitoxin
FPZ22_RS03650803617..803916+300WP_144890447.1type II toxin-antitoxin system RelE/ParE family toxinToxin
FPZ22_RS03655803927..804526-600WP_144890450.1YdeI/OmpD-associated family protein-
FPZ22_RS03660804513..804716-204WP_144890453.1hypothetical protein-
FPZ22_RS03665804813..805196-384WP_144890456.1fluoride efflux transporter CrcB-
FPZ22_RS03670805198..806298-1101WP_144890459.1alpha/beta hydrolase-
FPZ22_RS03675806308..806718-411WP_210412729.1carboxymuconolactone decarboxylase family protein-
FPZ22_RS13570806827..807000-174WP_168198925.1GNAT family N-acetyltransferase-
FPZ22_RS03685807082..807395+314Protein_725DUF1153 domain-containing protein-
FPZ22_RS03690807392..808213+822WP_210412727.1IS3 family transposase-
FPZ22_RS03695808241..808471+231Protein_727transposase-

Associated MGEs

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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
-flankIS/Tn--807395..808213818


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-92)

Antitoxin

Antitoxin ParD

(4-70)


Sequences

Toxin        


Download         Length: 100 a.a.        Molecular weight: 11223.93 Da        Isoelectric Point: 10.1386

>T134992 WP_144890447.1 NZ_CP042218:803617-803916 [Luteimonas granuli]
VSSFGLTRAARADLKSIARLTEARWGVRQRNAYLKEVDRIFHALARNPAMGRACDDILQGYRRLPHGAHVIYYRQIAGQE
VMIVRILHGAMDAEAYLDT

Download         Length: 300 bp

>T134992 NZ_CP042218:803617-803916 [Luteimonas granuli]
GTGAGCTCTTTTGGCCTCACCAGGGCCGCCCGAGCTGATCTCAAGTCGATTGCGCGCCTCACGGAAGCCCGGTGGGGCGT
ACGACAGCGCAATGCGTATCTGAAGGAAGTCGACCGGATCTTTCATGCACTGGCCAGGAATCCCGCGATGGGGCGTGCAT
GCGACGACATTCTGCAAGGCTACCGAAGACTCCCACACGGGGCGCACGTCATCTACTACAGGCAGATCGCTGGGCAAGAA
GTCATGATCGTCCGCATCCTGCACGGTGCGATGGACGCAGAGGCGTATCTGGACACCTGA

Antitoxin


Download         Length: 80 a.a.        Molecular weight: 8776.63 Da        Isoelectric Point: 4.5052

>AT134992 WP_144890444.1 NZ_CP042218:803381-803620 [Luteimonas granuli]
MAKNTSVSLGDHFEEFIGSQIDSGRYGSASEVVRAGLRLLETAENRLEVLRQALREGERSGRADYSYESLVSELDAERP

Download         Length: 240 bp

>AT134992 NZ_CP042218:803381-803620 [Luteimonas granuli]
ATGGCCAAGAACACGAGCGTCAGCCTGGGTGACCATTTCGAGGAATTCATCGGCAGCCAGATCGACAGTGGCCGATACGG
GTCGGCGAGTGAAGTCGTCCGAGCCGGGCTGCGCCTGCTCGAAACCGCCGAAAACAGGCTGGAAGTGCTTCGCCAGGCGC
TACGCGAGGGTGAGCGCAGCGGGCGTGCCGACTACAGCTACGAGTCGCTGGTTTCCGAACTGGACGCCGAGCGGCCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found
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Protein
Organism
Identities (%)
Coverage (%)
Ha-value
No matching records found

Structures

Toxin

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Source
ID
Structure
No matching records found

Antitoxin

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Source
ID
Structure
No matching records found

References