Detailed information of TA system TA134693

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): parDE/RHH(antitoxin)
• Location: 157717..158222
• Replicon: chromosome
• Accession: NZ_CP041945
• Organism: Pseudomonas aeruginosa strain ST773

Toxin (Protein)

• Gene name: parE
• Uniprot ID: V6A7K8
• Locus tag: FOZ66_RS00725
• Protein ID: WP_003083773.1
• Coordinates: 157717..157998 (-)
• Length: 94 a.a.

Antitoxin (Protein)

• Gene name: parD
• Uniprot ID: A0A1C7BDS9
• Locus tag: FOZ66_RS00730
• Protein ID: WP_003083775.1
• Coordinates: 157995..158222 (-)
• Length: 76 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FOZ66_RS00700	152968..154317	+	1350	WP_003119513.1	C4-dicarboxylate transporter DctA	-
FOZ66_RS00705	154366..155052	+	687	WP_003083762.1	FadR family transcriptional regulator	-
FOZ66_RS00710	155153..155887	+	735	WP_003110658.1	GntR family transcriptional regulator	-
FOZ66_RS00715	156091..156477	+	387	WP_003083767.1	aegerolysin family protein	-
FOZ66_RS00720	156509..157417	-	909	WP_003083769.1	LysR family transcriptional regulator	-
FOZ66_RS00725	157717..157998	-	282	WP_003083773.1	type II toxin-antitoxin system toxin ParE	Toxin
FOZ66_RS00730	157995..158222	-	228	WP_003083775.1	CopG family ribbon-helix-helix protein	Antitoxin
FOZ66_RS00735	158398..159018	-	621	WP_003101226.1	hypothetical protein	-
FOZ66_RS00740	159119..159619	+	501	WP_003162763.1	LEA type 2 family protein	-
FOZ66_RS00745	159692..160033	+	342	WP_003101229.1	alkylphosphonate utilization protein	-
FOZ66_RS00750	160115..161542	-	1428	WP_003083784.1	GABA permease	-
FOZ66_RS00755	161711..163204	-	1494	WP_003101230.1	CoA-acylating methylmalonate-semialdehyde dehydrogenase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• Toxin-antitoxin system, RelE/ParE toxin family (3-87)

Antitoxin

• Ribbon-helix-helix protein, CopG (5-42)

Sequences

Toxin

Protein

• Length: 94 a.a.
• Molecular weight: 10462.19 Da
• Isoelectric Point: 10.0435

>T134693 WP_003083773.1 NZ_CP041945:c157998-157717 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP

Nucleotide

• Length: 282 bp

>T134693 NZ_CP041945:c157998-157717 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGTAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCCCTGAAAGCCGTCCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCTTTTCGGGTAAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA

Antitoxin

Protein

• Length: 76 a.a.
• Molecular weight: 8556.58 Da
• Isoelectric Point: 5.5740

>AT134693 WP_003083775.1 NZ_CP041945:c158222-157995 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ

Nucleotide

• Length: 228 bp

>AT134693 NZ_CP041945:c158222-157995 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCGTATCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA

Structures

Toxin

• PDB: 6XRW

Antitoxin

• AlphaFold DB: A0A1C7BDS9