Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1912314..1912459 | Replicon | chromosome |
| Accession | NZ_CP041925 | ||
| Organism | Klebsiella aerogenes strain Ka37751 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1912349..1912452 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1912314..1912459 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPV33_RS09210 | 1907422..1909482 | + | 2061 | WP_063446400.1 | oligopeptidase B | - |
| FPV33_RS09215 | 1909485..1910144 | - | 660 | WP_015366006.1 | exodeoxyribonuclease X | - |
| FPV33_RS09220 | 1910224..1910454 | - | 231 | WP_015366007.1 | DNA polymerase III subunit theta | - |
| FPV33_RS09225 | 1910589..1910963 | + | 375 | WP_042893410.1 | CopC domain-containing protein YobA | - |
| FPV33_RS09230 | 1910967..1911836 | + | 870 | WP_032708610.1 | copper homeostasis membrane protein CopD | - |
| FPV33_RS09235 | 1911850..1912191 | + | 342 | WP_015705946.1 | YebY family protein | - |
| - | 1912314..1912459 | - | 146 | - | - | Antitoxin |
| - | 1912349..1912452 | + | 104 | - | - | Toxin |
| FPV33_RS09240 | 1912580..1913533 | - | 954 | WP_072207285.1 | spore coat U domain-containing protein | - |
| FPV33_RS09245 | 1913546..1915870 | - | 2325 | WP_048228936.1 | fimbrial biogenesis outer membrane usher protein | - |
| FPV33_RS09250 | 1915873..1916622 | - | 750 | WP_063446401.1 | molecular chaperone | - |
| FPV33_RS09255 | 1916640..1917158 | - | 519 | WP_015366014.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T134653 NZ_CP041925:1912349-1912452 [Klebsiella aerogenes]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT134653 NZ_CP041925:c1912459-1912314 [Klebsiella aerogenes]
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
AATAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTGACTGTGACAGGTTTTCCAGT
