Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2004935..2005206 | Replicon | chromosome |
| Accession | NZ_CP041919 | ||
| Organism | Escherichia coli strain Ec40743 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2005065..2005168 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2004935..2005206 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FPV29_RS09810 | 2001490..2002152 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| FPV29_RS09815 | 2002176..2002832 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| FPV29_RS09820 | 2002934..2003164 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| FPV29_RS09825 | 2003303..2003677 | + | 375 | WP_000204700.1 | CopC domain-containing protein YobA | - |
| FPV29_RS09830 | 2003681..2004553 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| FPV29_RS09835 | 2004566..2004907 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2004935..2005206 | - | 272 | - | - | Antitoxin |
| - | 2005065..2005168 | + | 104 | - | - | Toxin |
| FPV29_RS09840 | 2005303..2005959 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| FPV29_RS09845 | 2005960..2006151 | - | 192 | WP_001296140.1 | YebW family protein | - |
| FPV29_RS09850 | 2006256..2006492 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| FPV29_RS09855 | 2006610..2008049 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T134621 NZ_CP041919:2005065-2005168 [Escherichia coli]
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGTATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT134621 NZ_CP041919:c2005206-2004935 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATACAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
