Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC(toxin)
Location 2865837..2866546 Replicon chromosome
Accession NZ_CP041874
Organism Mycobacterium tuberculosis strain 1-0009P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0TQ26
Locus tag FPJ32_RS13335 Protein ID WP_003413164.1
Coordinates 2865837..2866250 (+) Length 138 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P95006
Locus tag FPJ32_RS13340 Protein ID WP_003413167.1
Coordinates 2866289..2866546 (+) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ32_RS13305 2860891..2862096 - 1206 WP_003413027.1 chorismate synthase -
FPJ32_RS13310 2862204..2862518 + 315 WP_009937839.1 hypothetical protein -
FPJ32_RS13315 2862814..2864025 + 1212 WP_003900845.1 alpha/beta hydrolase family protein -
FPJ32_RS13320 2864152..2864811 + 660 WP_003902296.1 hypothetical protein -
FPJ32_RS13325 2864808..2865470 + 663 WP_003905878.1 hypothetical protein -
FPJ32_RS13330 2865467..2865744 + 278 Protein_2631 type II toxin-antitoxin system VapB family antitoxin -
FPJ32_RS13335 2865837..2866250 + 414 WP_003413164.1 PIN domain nuclease Toxin
FPJ32_RS13340 2866289..2866546 + 258 WP_003413167.1 ribbon-helix-helix domain-containing protein Antitoxin
FPJ32_RS13345 2866543..2866920 + 378 WP_003413174.1 type II toxin-antitoxin system VapC family toxin -
FPJ32_RS13350 2866936..2867310 - 375 WP_003413177.1 hypothetical protein -
FPJ32_RS13355 2867410..2867805 - 396 WP_003413180.1 type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20 -
FPJ32_RS13360 2867802..2868047 - 246 WP_003413183.1 type II toxin-antitoxin system antitoxin VapB20 -
FPJ32_RS13365 2868458..2868877 - 420 WP_003413190.1 A24 family peptidase -
FPJ32_RS13370 2868889..2869698 - 810 WP_003413193.1 shikimate dehydrogenase -
FPJ32_RS13375 2869695..2870948 - 1254 WP_003413196.1 endolytic transglycosylase MltG -
FPJ32_RS13380 2870941..2871453 - 513 WP_003413197.1 Holliday junction resolvase RuvX -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(4-122)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 138 a.a.        Molecular weight: 15045.00 Da        Isoelectric Point: 5.4673

>T134477 WP_003413164.1 NZ_CP041874:2865837-2866250 [Mycobacterium tuberculosis]
MVFCVDTSAWHHAARPEVARRWLAALSADQIGICDHVRLEILYSANSATDYDALADELDGLARIPVGAETFTRACQVQRE
LAHVAGLHHRSVKIADLVIAAAAELSGTIVWHYDENYDRVAAITGQPTEWIVPRGTL

Download         Length: 414 bp

>T134477 NZ_CP041874:2865837-2866250 [Mycobacterium tuberculosis]
ATGGTGTTCTGCGTCGACACCAGCGCGTGGCATCACGCGGCGCGGCCGGAAGTTGCGCGCCGATGGTTGGCGGCCTTGTC
CGCGGACCAGATCGGCATCTGCGACCACGTGCGGTTGGAGATCCTGTACTCGGCGAACTCCGCTACCGACTACGACGCGC
TCGCCGACGAACTCGACGGCTTGGCCCGTATACCAGTCGGTGCCGAAACCTTTACGCGCGCATGCCAAGTCCAGCGTGAG
CTTGCCCACGTCGCCGGTCTGCATCACCGCAGCGTGAAGATCGCCGATCTTGTCATCGCCGCGGCGGCCGAACTTTCAGG
CACCATCGTGTGGCATTACGACGAGAACTATGACCGGGTCGCCGCCATCACCGGCCAACCTACGGAGTGGATCGTGCCGC
GCGGGACCCTTTAA

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9453.63 Da        Isoelectric Point: 10.6555

>AT134477 WP_003413167.1 NZ_CP041874:2866289-2866546 [Mycobacterium tuberculosis]
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYVDAIRGDLNERLA
RLGLA

Download         Length: 258 bp

>AT134477 NZ_CP041874:2866289-2866546 [Mycobacterium tuberculosis]
ATGCGGACTCAGGTGACCCTGGGCAAAGAGGAGCTTGAGCTGCTCGATCGTGCCGCCAAGGCGAGTGGCGCATCGCGGTC
CGAACTCATCCGACGCGCAATTCACCGTGCCTACGGGACTGGATCCAAGCAGGAACGGCTCGCCGCGCTCGACCACAGCC
GTGGCTCGTGGCGAGGACGGGACTTCACCGGCACCGAGTATGTCGACGCCATTCGGGGCGACCTCAACGAACGACTTGCT
CGGCTCGGTCTGGCGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TQ26

Antitoxin

Source ID Structure
AlphaFold DB A0A829C9W5

References