Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/-
Location 2416489..2417018 Replicon chromosome
Accession NZ_CP041871
Organism Mycobacterium tuberculosis strain 1-0021P6C4

Toxin (Protein)


Gene name parE Uniprot ID G0TMR4
Locus tag FPJ35_RS11240 Protein ID WP_003411124.1
Coordinates 2416489..2416806 (-) Length 106 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID P9WJ74
Locus tag FPJ35_RS11245 Protein ID WP_003411127.1
Coordinates 2416803..2417018 (-) Length 72 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ35_RS11210 2411626..2412702 + 1077 WP_003411110.1 hypothetical protein -
FPJ35_RS11215 2412699..2412980 + 282 WP_003411112.1 hypothetical protein -
FPJ35_RS11220 2413016..2414089 + 1074 WP_003411116.1 quinone-dependent dihydroorotate dehydrogenase -
FPJ35_RS11225 2414094..2414624 - 531 WP_193076253.1 YbhB/YbcL family Raf kinase inhibitor-like protein -
FPJ35_RS11230 2414672..2416018 - 1347 WP_003411121.1 M20/M25/M40 family metallo-hydrolase -
FPJ35_RS11240 2416489..2416806 - 318 WP_003411124.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
FPJ35_RS11245 2416803..2417018 - 216 WP_003411127.1 antitoxin ParD2 Antitoxin
FPJ35_RS11250 2417273..2418331 + 1059 WP_003411129.1 hypothetical protein -
FPJ35_RS11255 2418461..2418817 - 357 WP_003411130.1 hypothetical protein -
FPJ35_RS11260 2418912..2419694 - 783 WP_003411131.1 cell wall synthesis protein Wag31 -
FPJ35_RS11265 2419962..2420252 - 291 WP_003900476.1 YggT family protein -
FPJ35_RS11270 2420414..2421070 - 657 WP_003411133.1 cell division protein SepF -
FPJ35_RS11275 2421136..2421912 - 777 WP_003411137.1 YggS family pyridoxal phosphate-dependent enzyme -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-92)

Antitoxin

Conserved hypothetical protein CHP02574, addiction module

(11-69)


Sequences

Toxin        


Download         Length: 106 a.a.        Molecular weight: 12312.88 Da        Isoelectric Point: 6.4831

>T134295 WP_003411124.1 NZ_CP041871:c2416806-2416489 [Mycobacterium tuberculosis]
MTRRLRVHNGVEDDLFEAFSYYADAAPDQIDRLYNLFVDAVTKRIPQAPNAFAPLFKHYRHIYLRPFRYYVAYRTTDEAI
DILAVRHGMENPNAVEAEISGRTFE

Download         Length: 318 bp

>T134295 NZ_CP041871:c2416806-2416489 [Mycobacterium tuberculosis]
ATGACGCGCAGGCTGCGCGTCCATAACGGGGTTGAAGACGACCTATTCGAGGCGTTTTCCTACTACGCGGACGCGGCGCC
AGATCAGATCGATCGGCTTTACAACTTGTTTGTCGATGCCGTGACGAAGCGGATTCCGCAGGCTCCGAACGCGTTTGCGC
CGTTATTCAAGCACTATCGACACATCTACCTCCGGCCCTTCAGGTACTACGTTGCCTATCGGACGACCGACGAGGCTATC
GACATACTGGCTGTTCGGCACGGAATGGAGAACCCGAACGCGGTCGAGGCTGAGATCTCTGGCCGCACCTTCGAGTGA

Antitoxin


Download         Length: 72 a.a.        Molecular weight: 7880.70 Da        Isoelectric Point: 4.4055

>AT134295 WP_003411127.1 NZ_CP041871:c2417018-2416803 [Mycobacterium tuberculosis]
VVVNRALLASVDALSRDEQIELVEHINGNLAEGMHISEANQALIEARANDTDDAHWSTIDDFDKRIRARLG

Download         Length: 216 bp

>AT134295 NZ_CP041871:c2417018-2416803 [Mycobacterium tuberculosis]
GTGGTGGTCAACCGGGCATTGCTGGCGAGCGTCGACGCACTGTCGCGTGATGAGCAGATTGAGCTCGTCGAGCACATCAA
CGGAAACCTAGCCGAGGGCATGCATATCAGCGAGGCCAACCAGGCGCTCATCGAAGCGCGGGCCAATGACACCGACGATG
CTCATTGGTCCACCATTGATGACTTCGACAAGCGGATCCGCGCCCGGCTCGGATGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB G0TMR4

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAJ4

References