Detailed information of TA system TA134129

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/PIN(toxin)
• Location: 3195611..3196298
• Replicon: chromosome
• Accession: NZ_CP041868
• Organism: Mycobacterium tuberculosis strain 1-0030P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P65044
• Locus tag: FPJ38_RS15030
• Protein ID: WP_003414624.1
• Coordinates: 3195855..3196298 (+)
• Length: 148 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: -
• Locus tag: FPJ38_RS15025
• Protein ID: WP_014588668.1
• Coordinates: 3195611..3195868 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ38_RS15005	3190931..3191785	-	855	WP_003899516.1	GNAT family N-acetyltransferase	-
FPJ38_RS15010	3191841..3193004	-	1164	WP_003899517.1	flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase	-
FPJ38_RS15015	3193021..3194235	-	1215	WP_003414610.1	zinc metalloprotease Rip	-
FPJ38_RS15020	3194243..3195484	-	1242	WP_003414613.1	1-deoxy-D-xylulose-5-phosphate reductoisomerase	-
FPJ38_RS15025	3195611..3195868	+	258	WP_014588668.1	ribbon-helix-helix domain-containing protein	Antitoxin
FPJ38_RS15030	3195855..3196298	+	444	WP_003414624.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPJ38_RS15035	3196378..3197040	+	663	WP_003414630.1	cell surface glycolipoprotein Mpt83	-
FPJ38_RS15040	3197136..3197327	+	192	WP_003414632.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
FPJ38_RS15045	3197659..3199407	+	1749	WP_003912869.1	cytochrome c biogenesis protein DipZ	-
FPJ38_RS15050	3199503..3200084	+	582	WP_003414644.1	fasciclin domain-containing protein	-
FPJ38_RS15055	3200184..3200450	+	267	WP_015456449.1	DUF2631 domain-containing protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain toxin (1-142)

Antitoxin

• Ribbon-helix-helix protein, CopG (2-38)

Sequences

Toxin

Protein

• Length: 148 a.a.
• Molecular weight: 16595.72 Da
• Isoelectric Point: 6.4890

>T134129 WP_003414624.1 NZ_CP041868:3195855-3196298 [Mycobacterium tuberculosis]
MLCVDVNVLVYAHRADLREHADYRGLLERLANDDEPLGLPDSVLAGFIRVVTNRRVFTEPTSPQDAWQAVDALLAAPAAM
RLRPGERHWMAFRQLASDVDANGNDIADAHLAAYALENNATWLSADRGFARFRRLRWRHPLDGQTHL

Nucleotide

• Length: 444 bp

>T134129 NZ_CP041868:3195855-3196298 [Mycobacterium tuberculosis]
ATGCTGTGCGTTGATGTCAACGTGCTCGTTTACGCGCATCGGGCAGACCTACGGGAGCACGCGGACTATCGGGGTTTGCT
TGAGCGGCTGGCCAACGATGACGAGCCGCTGGGTCTACCAGATAGCGTGCTCGCCGGCTTCATCCGGGTGGTTACCAACC
GCCGCGTCTTCACCGAGCCGACGAGCCCACAGGACGCATGGCAGGCAGTCGACGCCCTACTCGCGGCACCCGCAGCCATG
CGACTTCGGCCTGGCGAGCGCCACTGGATGGCCTTTCGGCAGTTAGCGTCCGATGTTGATGCGAACGGCAACGACATTGC
GGACGCGCACCTGGCCGCCTACGCGCTAGAGAACAACGCAACCTGGTTGAGCGCCGACCGCGGCTTTGCCCGTTTCCGTC
GACTGCGCTGGCGTCATCCGTTGGACGGTCAGACCCATCTATAA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 8983.19 Da
• Isoelectric Point: 10.8344

>AT134129 WP_014588668.1 NZ_CP041868:3195611-3195868 [Mycobacterium tuberculosis]
VRTTIRIDDELYREVKAKAARSGRAVAAVLEDAVRRGLNPPKPQAAGRYRVQPSGKGGLRPGVDLSSNAALAEAMNDGVS
VDAVR

Nucleotide

• Length: 258 bp

>AT134129 NZ_CP041868:3195611-3195868 [Mycobacterium tuberculosis]
GTGCGCACGACGATCCGTATCGATGACGAGCTGTACCGCGAGGTGAAAGCAAAGGCCGCTCGTTCCGGGCGTGCCGTGGC
CGCGGTTCTTGAAGATGCGGTGCGGCGTGGTCTCAACCCGCCTAAGCCGCAGGCCGCCGGCCGTTATCGAGTCCAGCCGT
CGGGTAAGGGCGGCCTGCGGCCCGGTGTCGATCTATCGTCCAACGCCGCACTTGCCGAAGCGATGAACGACGGCGTGTCG
GTCGATGCTGTGCGTTGA

Structures

Toxin

• PDB: 7VWO