134104

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1951634..1952247 Replicon chromosome
Accession NZ_CP041868
Organism Mycobacterium tuberculosis strain 1-0030P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P9WFA2
Locus tag FPJ38_RS08985 Protein ID WP_003408465.1
Coordinates 1951634..1952023 (-) Length 130 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID P9WJ52
Locus tag FPJ38_RS08990 Protein ID WP_003408469.1
Coordinates 1952020..1952247 (-) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ38_RS08955 1947261..1948175 + 915 WP_003898985.1 3-hydroxyacyl-CoA dehydrogenase family protein -
FPJ38_RS08960 1948178..1949008 + 831 WP_003408448.1 cyclase family protein -
FPJ38_RS08965 1949008..1949358 + 351 WP_003898986.1 cupin domain-containing protein -
FPJ38_RS08970 1949411..1950231 + 821 Protein_1770 3-keto-5-aminohexanoate cleavage protein -
FPJ38_RS08975 1950245..1951024 + 780 WP_003408460.1 IclR family transcriptional regulator -
FPJ38_RS08985 1951634..1952023 - 390 WP_003408465.1 PIN domain-containing protein Toxin
FPJ38_RS08990 1952020..1952247 - 228 WP_003408469.1 antitoxin Antitoxin
FPJ38_RS08995 1952465..1953949 + 1485 WP_003408473.1 carboxylase -
FPJ38_RS09000 1953946..1955193 + 1248 WP_003408476.1 serine hydrolase -
FPJ38_RS09005 1955236..1955655 - 420 WP_003408483.1 hypothetical protein -
FPJ38_RS09010 1955645..1956355 - 711 WP_003408486.1 winged helix-turn-helix transcriptional regulator -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(2-116)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 130 a.a.        Molecular weight: 13817.98 Da        Isoelectric Point: 7.0612

>T134104 WP_003408465.1 NZ_CP041868:c1952023-1951634 [Mycobacterium tuberculosis]
VIVLDASAAVELMLTTPAGAAVARRLRGETVHAPAHFDVEVIGAIRQAVVRQLISDHEGLVVVVNFLSLPVRRWPLKPFT
QRAYQLRSTHTVADGAYVALAEGLGVPLITCDGRLAQSHGHNAEIELVA

Download         Length: 390 bp

>T134104 NZ_CP041868:c1952023-1951634 [Mycobacterium tuberculosis]
GTGATCGTGTTGGACGCCTCGGCGGCCGTCGAGCTCATGCTCACGACGCCGGCGGGTGCGGCGGTCGCCCGGCGCTTGCG
GGGCGAAACCGTGCACGCCCCTGCACATTTCGATGTCGAGGTGATCGGGGCGATACGTCAAGCGGTCGTGCGTCAGCTGA
TCAGCGATCATGAAGGACTCGTCGTGGTTGTCAACTTCCTTAGCCTGCCCGTTCGGCGTTGGCCGTTAAAGCCATTCACC
CAGCGTGCCTACCAACTTCGGTCCACTCATACCGTGGCCGATGGAGCCTACGTCGCCCTCGCCGAGGGCCTCGGCGTACC
GCTTATCACTTGCGACGGGCGACTTGCCCAATCCCATGGCCATAATGCGGAGATCGAGCTTGTCGCCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8226.39 Da        Isoelectric Point: 4.3313

>AT134104 WP_003408469.1 NZ_CP041868:c1952247-1952020 [Mycobacterium tuberculosis]
MSAMVQIRNVPDELLHELKARAAAQRMSLSDFLLARLAEIAEEPALDDVLDRLAALPRRDLGASAAELVDEARSE

Download         Length: 228 bp

>AT134104 NZ_CP041868:c1952247-1952020 [Mycobacterium tuberculosis]
ATGTCCGCCATGGTTCAGATCCGCAACGTTCCCGACGAGCTTCTCCACGAGCTGAAGGCCCGCGCAGCGGCGCAACGGAT
GAGCCTGAGCGATTTCCTCCTAGCACGGCTTGCCGAGATCGCGGAAGAACCGGCCCTCGACGACGTTCTCGACCGTCTAG
CGGCACTGCCGCGCCGGGATCTCGGCGCGAGCGCAGCCGAGCTTGTTGACGAGGCTCGATCTGAGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BUI9

Antitoxin

Source ID Structure
AlphaFold DB A0A7U4FAN9

References