Detailed information of TA system TA133886

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 3050420..3051099
• Replicon: chromosome
• Accession: NZ_CP041864
• Organism: Mycobacterium tuberculosis strain 1-0044P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WF90
• Locus tag: FPJ42_RS14370
• Protein ID: WP_003414059.1
• Coordinates: 3050420..3050836 (-)
• Length: 139 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TF64
• Locus tag: FPJ42_RS14375
• Protein ID: WP_003414061.1
• Coordinates: 3050833..3051099 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ42_RS14350	3046472..3047374	-	903	WP_003900564.1	4-hydroxy-tetrahydrodipicolinate synthase	-
FPJ42_RS14355	3047443..3048195	-	753	WP_003899465.1	FAD-dependent thymidylate synthase	-
FPJ42_RS14360	3048439..3048714	-	276	WP_003414055.1	type I restriction endonuclease subunit S	-
FPJ42_RS14365	3048711..3050333	-	1623	WP_003906897.1	type I restriction-modification system subunit M	-
FPJ42_RS14370	3050420..3050836	-	417	WP_003414059.1	type II toxin-antitoxin system toxin ribonuclease C21	Toxin
FPJ42_RS14375	3050833..3051099	-	267	WP_003414061.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
FPJ42_RS14380	3051125..3051520	-	396	WP_003414064.1	type II toxin-antitoxin system VapC family toxin	-
FPJ42_RS14385	3051517..3051786	-	270	WP_003414066.1	type II toxin-antitoxin system VapB family antitoxin	-
FPJ42_RS14390	3051796..3052890	-	1095	WP_003414068.1	restriction endonuclease subunit S	-
FPJ42_RS14395	3052887..3053306	-	420	WP_003414070.1	winged helix-turn-helix domain-containing protein	-
FPJ42_RS14400	3053380..3053859	-	480	WP_003414073.1	dihydrofolate reductase	-
FPJ42_RS14405	3053930..3054730	-	801	WP_003911953.1	thymidylate synthase	-
FPJ42_RS14410	3054886..3055623	+	738	WP_003414079.1	dienelactone hydrolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-123)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (16-56)

Sequences

Toxin

Protein

• Length: 139 a.a.
• Molecular weight: 15773.00 Da
• Isoelectric Point: 7.1294

>T133886 WP_003414059.1 NZ_CP041864:c3050836-3050420 [Mycobacterium tuberculosis]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Nucleotide

• Length: 417 bp

>T133886 NZ_CP041864:c3050836-3050420 [Mycobacterium tuberculosis]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9493.77 Da
• Isoelectric Point: 7.2783

>AT133886 WP_003414061.1 NZ_CP041864:c3051099-3050833 [Mycobacterium tuberculosis]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Nucleotide

• Length: 267 bp

>AT133886 NZ_CP041864:c3051099-3050833 [Mycobacterium tuberculosis]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Structures

Toxin

• PDB: 5SV2

Antitoxin

• AlphaFold DB: G0TF64