133454

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 2247424..2248050 Replicon chromosome
Accession NZ_CP041857
Organism Mycobacterium tuberculosis strain 1-0069P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P64926
Locus tag FPJ50_RS10430 Protein ID WP_003410075.1
Coordinates 2247652..2248050 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A806JLL8
Locus tag FPJ50_RS10425 Protein ID WP_003911750.1
Coordinates 2247424..2247651 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ50_RS10415 2245463..2245807 - 345 WP_003410065.1 ferredoxin family protein -
FPJ50_RS10420 2245996..2247165 - 1170 WP_003899126.1 ATP-binding protein -
FPJ50_RS10425 2247424..2247651 + 228 WP_003911750.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
FPJ50_RS10430 2247652..2248050 + 399 WP_003410075.1 PIN domain nuclease Toxin
FPJ50_RS10435 2248233..2248664 - 432 WP_003410078.1 MarR family winged helix-turn-helix transcriptional regulator -
FPJ50_RS10440 2248765..2249199 + 435 WP_003914358.1 DUF1398 domain-containing protein -
FPJ50_RS10445 2249636..2249815 - 180 Protein_2064 hypothetical protein -
FPJ50_RS10450 2249876..2250523 + 648 WP_071854215.1 transposase -
FPJ50_RS10455 2250477..2251067 + 591 WP_003899131.1 IS110 family transposase -
FPJ50_RS10460 2251195..2252451 - 1257 WP_003902247.1 HNH endonuclease -
FPJ50_RS10465 2252805..2253005 + 201 Protein_2068 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-120)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(2-43)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14731.02 Da        Isoelectric Point: 6.7067

>T133454 WP_003410075.1 NZ_CP041857:2247652-2248050 [Mycobacterium tuberculosis]
MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQRFAIEPLAPVRDAEDAAAI
HRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIRTHCGLRTEPLF

Download         Length: 399 bp

>T133454 NZ_CP041857:2247652-2248050 [Mycobacterium tuberculosis]
ATGATCGTCGACACCTCGGTCTGGATCGCATATCTCTCCACGTCAGAGTCGTTGGCCAGTCGCTGGCTAGCCGATCGCAT
TGCCGCTGACTCGACGGTGATCGTGCCCGAGGTGGTGATGATGGAGCTGCTGATCGGTAAGACCGATGAGGACACCGCCG
CACTGCGCCGACGGCTCCTGCAGCGATTCGCTATCGAACCGCTGGCCCCGGTCCGCGACGCGGAAGATGCCGCCGCCATT
CACCGGCGCTGTCGTCGCGGCGGCGACACCGTACGCAGCCTGATCGATTGCCAGGTGGCCGCGATGGCGTTGCGGATCGG
GGTCGCCGTGGCGCATCGTGATCGCGACTACGAGGCGATCCGCACACATTGCGGACTACGCACCGAGCCGTTGTTCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8346.16 Da        Isoelectric Point: 4.1621

>AT133454 WP_003911750.1 NZ_CP041857:2247424-2247651 [Mycobacterium tuberculosis]
VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIESFSDTDRKLADES

Download         Length: 228 bp

>AT133454 NZ_CP041857:2247424-2247651 [Mycobacterium tuberculosis]
GTGTCACGGACCAACATCGAGATCGACGACGAACTCGTGGCCGCCGCACAGCGGATGTACCGACTCGATTCCAAGCGAAG
TGCCGTCGACCTCGCGCTGCGCCGGCTCGTGGGTGAACCGTTGGGCCGCGATGAGGCTTTGGCGCTGCAGGGCAGCGGTT
TCGACTTCAGCAACGATGAGATCGAATCGTTCTCGGATACGGACCGCAAGCTCGCCGACGAGTCGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4CHG

Antitoxin

Source ID Structure
AlphaFold DB A0A806JLL8

References