Detailed information of TA system TA133407

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 3063754..3064441
• Replicon: chromosome
• Accession: NZ_CP041856
• Organism: Mycobacterium tuberculosis strain 1-0071P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TF65
• Locus tag: FPJ51_RS14400
• Protein ID: WP_003414064.1
• Coordinates: 3064046..3064441 (-)
• Length: 132 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TF64
• Locus tag: FPJ51_RS14395
• Protein ID: WP_003414061.1
• Coordinates: 3063754..3064020 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ51_RS14370	3059393..3060295	-	903	WP_003900564.1	4-hydroxy-tetrahydrodipicolinate synthase	-
FPJ51_RS14375	3060364..3061116	-	753	WP_003899465.1	FAD-dependent thymidylate synthase	-
FPJ51_RS14380	3061360..3061635	-	276	WP_003414055.1	type I restriction endonuclease subunit S	-
FPJ51_RS14385	3061632..3063254	-	1623	WP_003414057.1	type I restriction-modification system subunit M	-
FPJ51_RS14390	3063341..3063757	-	417	WP_003414059.1	type II toxin-antitoxin system toxin ribonuclease C21	-
FPJ51_RS14395	3063754..3064020	-	267	WP_003414061.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
FPJ51_RS14400	3064046..3064441	-	396	WP_003414064.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPJ51_RS14405	3064438..3064707	-	270	WP_003414066.1	type II toxin-antitoxin system VapB family antitoxin	-
FPJ51_RS14410	3064717..3065811	-	1095	WP_003414068.1	restriction endonuclease subunit S	-
FPJ51_RS14415	3065808..3066227	-	420	WP_003414070.1	winged helix-turn-helix domain-containing protein	-
FPJ51_RS14420	3066301..3066780	-	480	WP_003414073.1	dihydrofolate reductase	-
FPJ51_RS14425	3066851..3067651	-	801	Protein_2846	thymidylate synthase	-
FPJ51_RS14430	3067807..3068544	+	738	WP_003414079.1	dienelactone hydrolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (1-125)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (16-56)

Sequences

Toxin

Protein

• Length: 132 a.a.
• Molecular weight: 14340.04 Da
• Isoelectric Point: 4.7145

>T133407 WP_003414064.1 NZ_CP041856:c3064441-3064046 [Mycobacterium tuberculosis]
VIVDTSAIVAIVSGESGAQVLKEALERSPNSRMSAPNYVELCAIMQRRDRPEISRLVDRLLDDYGIQVEAVDADQARVAA
QAYRDYGRGSGHPARLNLGDTYSYALAQVTGEPLLFRGDDFTHTDIRPACT

Nucleotide

• Length: 396 bp

>T133407 NZ_CP041856:c3064441-3064046 [Mycobacterium tuberculosis]
GTGATCGTCGATACGTCGGCCATCGTCGCCATCGTGAGCGGGGAATCGGGCGCGCAGGTGCTCAAGGAGGCGCTGGAGCG
GTCACCGAACTCCCGAATGTCCGCGCCCAACTACGTCGAACTGTGCGCGATCATGCAGCGGCGGGACCGGCCGGAGATCT
CTCGATTGGTGGACCGTTTGCTGGACGACTACGGAATCCAGGTCGAAGCCGTCGACGCCGACCAAGCCCGCGTGGCCGCG
CAGGCGTATCGCGACTACGGCCGCGGCAGCGGCCATCCGGCCCGTCTCAACCTCGGCGACACCTACAGCTACGCCCTGGC
CCAGGTCACCGGGGAGCCGCTGCTGTTTCGTGGCGATGACTTCACGCATACCGATATCCGGCCCGCGTGCACCTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9493.77 Da
• Isoelectric Point: 7.2783

>AT133407 WP_003414061.1 NZ_CP041856:c3064020-3063754 [Mycobacterium tuberculosis]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Nucleotide

• Length: 267 bp

>AT133407 NZ_CP041856:c3064020-3063754 [Mycobacterium tuberculosis]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Structures

Toxin

• AlphaFold DB: G0TF65

Antitoxin

• AlphaFold DB: G0TF64