Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 840481..841190 Replicon chromosome
Accession NZ_CP041854
Organism Mycobacterium tuberculosis strain 1-0102P6C4

Toxin (Protein)


Gene name vapC Uniprot ID -
Locus tag FPJ54_RS03940 Protein ID WP_116298772.1
Coordinates 840783..841190 (+) Length 136 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0TEX4
Locus tag FPJ54_RS03935 Protein ID WP_003403834.1
Coordinates 840481..840738 (+) Length 86 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ54_RS03930 838117..840390 + 2274 WP_016330384.1 PE family protein -
FPJ54_RS03935 840481..840738 + 258 WP_003403834.1 ribbon-helix-helix protein, CopG family Antitoxin
FPJ54_RS03940 840783..841190 + 408 WP_116298772.1 type II toxin-antitoxin system VapC family toxin Toxin
FPJ54_RS03945 841280..841454 - 175 Protein_780 transposase -
FPJ54_RS03950 841567..841812 + 246 WP_003403841.1 hypothetical protein -
FPJ54_RS03955 841881..842765 - 885 WP_003403844.1 3-hydroxyisobutyrate dehydrogenase -
FPJ54_RS03960 842776..843938 - 1163 Protein_783 acyl-CoA dehydrogenase family protein -
FPJ54_RS03965 843945..845477 - 1533 WP_003403847.1 CoA-acylating methylmalonate-semialdehyde dehydrogenase -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(1-126)

Antitoxin

(2-36)


Sequences


Toxin        


Download         Length: 136 a.a.        Molecular weight: 15026.31 Da        Isoelectric Point: 8.0185

>T133255 WP_116298772.1 NZ_CP041854:840783-841190 [Mycobacterium tuberculosis]
VLLAAHRGDHPNHRTVRPWFDRLLAADDPFTVPNLVWASFLRLATNRRIFEIPSPRAEAFAFVEAVTAQPHHLPTNPGPR
HLMLLRKLCDEADASGDLIPDAVLAAIAVGHHCAVVSLDRDFARFASVRHIRPPL

Download         Length: 408 bp

>T133255 NZ_CP041854:840783-841190 [Mycobacterium tuberculosis]
GTGCTGCTGGCTGCACACCGCGGTGACCACCCGAATCACCGAACCGTCCGCCCCTGGTTCGATCGACTGCTCGCGGCTGA
CGACCCCTTCACAGTGCCGAACCTGGTATGGGCGTCGTTCCTCCGGCTGGCAACGAATCGACGCATCTTCGAGATTCCGT
CACCGCGAGCAGAGGCATTCGCATTCGTCGAAGCCGTCACCGCCCAGCCCCATCACCTTCCGACGAACCCCGGTCCCAGA
CACCTCATGCTGCTGCGAAAACTCTGCGACGAGGCCGACGCATCGGGCGACTTGATACCTGACGCGGTACTCGCGGCCAT
AGCAGTGGGGCATCACTGCGCCGTGGTGAGCCTGGACAGGGATTTCGCCCGGTTTGCCTCGGTGCGCCACATTCGCCCGC
CGCTCTAG

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9114.28 Da        Isoelectric Point: 10.6530

>AT133255 WP_003403834.1 NZ_CP041854:840481-840738 [Mycobacterium tuberculosis]
MRTTVSISDEILAAAKRRARERGQSLGAVIEDALRREFAAAHVGGARPTVPVFDGGTGPRRGIDLTSNRALSEVLDEGLE
LNSRK

Download         Length: 258 bp

>AT133255 NZ_CP041854:840481-840738 [Mycobacterium tuberculosis]
ATGCGCACCACGGTGTCAATCTCCGATGAAATACTCGCTGCCGCCAAACGCCGGGCCCGCGAGCGTGGTCAATCGCTGGG
CGCTGTGATCGAGGACGCCCTTCGGCGGGAGTTCGCCGCCGCCCACGTCGGCGGCGCCCGCCCGACCGTCCCGGTTTTCG
ACGGCGGCACCGGTCCGCGGCGAGGCATCGACCTGACCTCGAATAGAGCGTTGTCCGAAGTGCTCGACGAGGGCCTGGAA
CTGAACTCCCGGAAGTAA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure


Antitoxin

Source ID Structure
AlphaFold DB G0TEX4

References