Detailed information of TA system TA133222

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/LOTUS_5_Limkain_b1(toxin)
• Location: 2896778..2897409
• Replicon: chromosome
• Accession: NZ_CP041853
• Organism: Mycobacterium tuberculosis strain 1-0107P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: G0TQ28
• Locus tag: FPJ55_RS13470
• Protein ID: WP_003413174.1
• Coordinates: 2897032..2897409 (+)
• Length: 126 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: P95006
• Locus tag: FPJ55_RS13465
• Protein ID: WP_003413167.1
• Coordinates: 2896778..2897035 (+)
• Length: 86 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ55_RS13435	2892692..2893006	+	315	WP_009937839.1	hypothetical protein	-
FPJ55_RS13440	2893302..2894513	+	1212	WP_003900845.1	alpha/beta hydrolase family protein	-
FPJ55_RS13445	2894640..2895299	+	660	WP_003900846.1	LppA family lipoprotein	-
FPJ55_RS13450	2895296..2895958	+	663	WP_023643170.1	hypothetical protein	-
FPJ55_RS13455	2895955..2896233	+	279	WP_003901422.1	type II toxin-antitoxin system VapB family antitoxin	-
FPJ55_RS13460	2896326..2896739	+	414	WP_003413164.1	PIN domain nuclease	-
FPJ55_RS13465	2896778..2897035	+	258	WP_003413167.1	ribbon-helix-helix domain-containing protein	Antitoxin
FPJ55_RS13470	2897032..2897409	+	378	WP_003413174.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPJ55_RS13475	2897425..2897799	-	375	WP_003413177.1	hypothetical protein	-
FPJ55_RS13480	2897899..2898294	-	396	WP_003413180.1	type II toxin-antitoxin system toxin 23S rRNA-specific endonuclease VapC20	-
FPJ55_RS13485	2898291..2898536	-	246	WP_003413183.1	type II toxin-antitoxin system antitoxin VapB20	-
FPJ55_RS13490	2898947..2899366	-	420	WP_003413190.1	A24 family peptidase	-
FPJ55_RS13495	2899378..2900187	-	810	WP_003413193.1	shikimate dehydrogenase	-
FPJ55_RS13500	2900184..2901437	-	1254	WP_003413196.1	endolytic transglycosylase MltG	-
FPJ55_RS13505	2901430..2901942	-	513	WP_003413197.1	Holliday junction resolvase RuvX	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (3-111)

Antitoxin

• Ribbon-helix-helix protein, CopG (2-38)

Sequences

Toxin

Protein

• Length: 126 a.a.
• Molecular weight: 13728.72 Da
• Isoelectric Point: 4.4687

>T133222 WP_003413174.1 NZ_CP041853:2897032-2897409 [Mycobacterium tuberculosis]
VKLIDTTIAVDHLRGEPAAAVLLAELINNGEEIAASELVRFELLAGVRESELAALEAFFSAVVWTLVTEDIARIGGRLAR
RYRSSHRGIDDVDYLIAATAIVVDADLLTTNVRHFPMFPDLQPPY

Nucleotide

• Length: 378 bp

>T133222 NZ_CP041853:2897032-2897409 [Mycobacterium tuberculosis]
GTGAAGCTGATCGACACCACCATCGCGGTCGACCACCTTCGCGGCGAACCCGCGGCAGCCGTGCTGCTCGCCGAACTGAT
AAACAACGGTGAGGAGATCGCGGCCAGCGAGCTGGTCCGATTCGAACTCCTCGCCGGTGTGCGGGAAAGCGAACTCGCGG
CGCTCGAGGCCTTCTTCTCGGCAGTGGTGTGGACCCTGGTGACCGAGGACATTGCCCGGATCGGCGGACGACTCGCCCGT
CGATACCGGTCCAGCCACCGCGGTATCGACGACGTGGACTACCTGATCGCTGCGACCGCCATTGTGGTCGACGCCGACCT
GCTCACCACCAATGTGCGCCACTTCCCGATGTTCCCGGATCTGCAGCCGCCGTACTGA

Antitoxin

Protein

• Length: 86 a.a.
• Molecular weight: 9453.63 Da
• Isoelectric Point: 10.6555

>AT133222 WP_003413167.1 NZ_CP041853:2896778-2897035 [Mycobacterium tuberculosis]
MRTQVTLGKEELELLDRAAKASGASRSELIRRAIHRAYGTGSKQERLAALDHSRGSWRGRDFTGTEYVDAIRGDLNERLA
RLGLA

Nucleotide

• Length: 258 bp

>AT133222 NZ_CP041853:2896778-2897035 [Mycobacterium tuberculosis]
ATGCGGACTCAGGTGACCCTGGGCAAAGAGGAGCTTGAGCTGCTCGATCGTGCCGCCAAGGCGAGTGGCGCATCGCGGTC
CGAACTCATCCGACGCGCAATTCACCGTGCCTACGGGACTGGATCCAAGCAGGAACGGCTCGCCGCGCTCGACCACAGCC
GTGGCTCGTGGCGAGGACGGGACTTCACCGGCACCGAGTATGTCGACGCCATTCGGGGCGACCTCAACGAACGACTTGCT
CGGCTCGGTCTGGCGTGA

Structures

Toxin

• AlphaFold DB: G0TQ28

Antitoxin

• AlphaFold DB: A0A829C9W5