Detailed information of TA system TA132204

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapC-mazE/PIN(toxin)
• Location: 3658015..3658807
• Replicon: chromosome
• Accession: NZ_CP041836
• Organism: Mycobacterium tuberculosis strain 2-0031P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WFB2
• Locus tag: FPJ72_RS17125
• Protein ID: WP_003403386.1
• Coordinates: 3658015..3658452 (+)
• Length: 146 a.a.

Antitoxin (Protein)

• Gene name: mazE
• Uniprot ID: G0TQE0
• Locus tag: FPJ72_RS17130
• Protein ID: WP_003403381.1
• Coordinates: 3658562..3658807 (+)
• Length: 82 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ72_RS17100	3654478..3654651	-	174	WP_003898549.1	hypothetical protein	-
FPJ72_RS17105	3654648..3654986	-	339	WP_003403405.1	PIN domain-containing protein	-
FPJ72_RS17110	3654898..3655224	-	327	WP_003403401.1	type II toxin-antitoxin system Phd/YefM family antitoxin	-
FPJ72_RS17115	3655287..3657650	-	2364	WP_003901895.1	arylsulfatase AtsD	-
FPJ72_RS17120	3657764..3658018	+	255	WP_003911263.1	antitoxin VapB7	-
FPJ72_RS17125	3658015..3658452	+	438	WP_003403386.1	type II toxin-antitoxin system VapC family toxin	Toxin
FPJ72_RS17130	3658562..3658807	+	246	WP_003403381.1	ribbon-helix-helix protein, CopG family	Antitoxin
FPJ72_RS17135	3658794..3659102	+	309	WP_003403376.1	type II toxin-antitoxin system PemK/MazF family toxin	-
FPJ72_RS17140	3659378..3660094	+	717	WP_003403371.1	CPBP family intramembrane metalloprotease	-
FPJ72_RS17145	3660170..3660325	+	156	WP_003403368.1	type II toxin-antitoxin system VapB family antitoxin	-
FPJ72_RS17150	3660420..3660803	+	384	WP_003403365.1	ribonuclease VapC6	-
FPJ72_RS17155	3661191..3662201	-	1011	WP_003911248.1	ABC transporter ATP-binding protein	-
FPJ72_RS17160	3662282..3663787	-	1506	WP_003403360.1	carotenoid cleavage oxygenase	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (2-126)

Antitoxin

• Ribbon-helix-helix protein, CopG (2-38)

Sequences

Toxin

Protein

• Length: 146 a.a.
• Molecular weight: 15245.39 Da
• Isoelectric Point: 5.1865

>T132204 WP_003403386.1 NZ_CP041836:3658015-3658452 [Mycobacterium tuberculosis]
MIVLDTTVLVYAKGAEHPLRDPCRDLVAAIADERIAATTTAEVIQEFVHVRARRRDRSDAAALGRVTMPNCSRRYSPSIE
ATSKRGLTLFETTPGLEACDAVLAAVAASAGATALVSADPAFADLSDVVHVIPDAAGMVSLLGDR

Nucleotide

• Length: 438 bp

>T132204 NZ_CP041836:3658015-3658452 [Mycobacterium tuberculosis]
ATGATAGTGCTCGACACCACCGTCCTCGTCTATGCCAAAGGCGCCGAGCATCCACTCCGCGATCCCTGCCGCGATCTCGT
CGCGGCAATCGCCGACGAACGCATCGCTGCGACCACCACCGCCGAGGTGATCCAGGAGTTCGTCCACGTACGCGCCCGCC
GGCGCGACCGCAGCGACGCCGCCGCGCTGGGCCGTGTGACTATGCCGAACTGCTCTCGCCGCTACTCACCATCAATCGAG
GCCACCTCGAAGCGCGGCCTGACGCTGTTCGAGACAACGCCAGGGCTTGAAGCCTGCGACGCGGTGCTCGCGGCGGTTGC
CGCAAGCGCCGGCGCGACCGCTCTTGTCTCGGCTGACCCGGCGTTCGCCGATCTGTCGGATGTCGTGCACGTCATTCCCG
ACGCGGCCGGGATGGTCAGCCTGCTCGGCGACCGCTGA

Antitoxin

Protein

• Length: 82 a.a.
• Molecular weight: 9169.01 Da
• Isoelectric Point: 4.2070

>AT132204 WP_003403381.1 NZ_CP041836:3658562-3658807 [Mycobacterium tuberculosis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Nucleotide

• Length: 246 bp

>AT132204 NZ_CP041836:3658562-3658807 [Mycobacterium tuberculosis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Structures

Toxin

• AlphaFold DB: A0A7U4BSW5

Antitoxin

• AlphaFold DB: G0TQE0