132179

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) vapBC/VapC-VapB
Location 2027863..2028489 Replicon chromosome
Accession NZ_CP041836
Organism Mycobacterium tuberculosis strain 2-0031P6C4

Toxin (Protein)


Gene name vapC Uniprot ID P64926
Locus tag FPJ72_RS09295 Protein ID WP_003410075.1
Coordinates 2028091..2028489 (+) Length 133 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID A0A806JLL8
Locus tag FPJ72_RS09290 Protein ID WP_003911750.1
Coordinates 2027863..2028090 (+) Length 76 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ72_RS09280 2025902..2026246 - 345 WP_003410065.1 ferredoxin family protein -
FPJ72_RS09285 2026435..2027604 - 1170 WP_003899126.1 ATP-binding protein -
FPJ72_RS09290 2027863..2028090 + 228 WP_003911750.1 type II toxin-antitoxin system VapB family antitoxin Antitoxin
FPJ72_RS09295 2028091..2028489 + 399 WP_003410075.1 PIN domain nuclease Toxin
FPJ72_RS09300 2028672..2029103 - 432 WP_003410078.1 MarR family winged helix-turn-helix transcriptional regulator -
FPJ72_RS09305 2029204..2029638 + 435 WP_003914358.1 DUF1398 domain-containing protein -
FPJ72_RS09310 2030075..2030254 - 180 Protein_1846 hypothetical protein -
FPJ72_RS09315 2030315..2030962 + 648 WP_071854215.1 transposase -
FPJ72_RS09320 2030916..2031506 + 591 WP_003899131.1 IS110 family transposase -
FPJ72_RS09325 2031634..2032890 - 1257 WP_003902247.1 HNH endonuclease -
FPJ72_RS09330 2033244..2033444 + 201 Protein_1850 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

PIN domain

(1-120)

Antitoxin

Bacterial antitoxin of type II TA system, VapB

(2-43)


Sequences

Toxin        


Download         Length: 133 a.a.        Molecular weight: 14731.02 Da        Isoelectric Point: 6.7067

>T132179 WP_003410075.1 NZ_CP041836:2028091-2028489 [Mycobacterium tuberculosis]
MIVDTSVWIAYLSTSESLASRWLADRIAADSTVIVPEVVMMELLIGKTDEDTAALRRRLLQRFAIEPLAPVRDAEDAAAI
HRRCRRGGDTVRSLIDCQVAAMALRIGVAVAHRDRDYEAIRTHCGLRTEPLF

Download         Length: 399 bp

>T132179 NZ_CP041836:2028091-2028489 [Mycobacterium tuberculosis]
ATGATCGTCGACACCTCGGTCTGGATCGCATATCTCTCCACGTCAGAGTCGTTGGCCAGTCGCTGGCTAGCCGATCGCAT
TGCCGCTGACTCGACGGTGATCGTGCCCGAGGTGGTGATGATGGAGCTGCTGATCGGTAAGACCGATGAGGACACCGCCG
CACTGCGCCGACGGCTCCTGCAGCGATTCGCTATCGAACCGCTGGCCCCGGTCCGCGACGCGGAAGATGCCGCCGCCATT
CACCGGCGCTGTCGTCGCGGCGGCGACACCGTACGCAGCCTGATCGATTGCCAGGTGGCCGCGATGGCGTTGCGGATCGG
GGTCGCCGTGGCGCATCGTGATCGCGACTACGAGGCGATCCGCACACATTGCGGACTACGCACCGAGCCGTTGTTCTGA

Antitoxin


Download         Length: 76 a.a.        Molecular weight: 8346.16 Da        Isoelectric Point: 4.1621

>AT132179 WP_003911750.1 NZ_CP041836:2027863-2028090 [Mycobacterium tuberculosis]
VSRTNIEIDDELVAAAQRMYRLDSKRSAVDLALRRLVGEPLGRDEALALQGSGFDFSNDEIESFSDTDRKLADES

Download         Length: 228 bp

>AT132179 NZ_CP041836:2027863-2028090 [Mycobacterium tuberculosis]
GTGTCACGGACCAACATCGAGATCGACGACGAACTCGTGGCCGCCGCACAGCGGATGTACCGACTCGATTCCAAGCGAAG
TGCCGTCGACCTCGCGCTGCGCCGGCTCGTGGGTGAACCGTTGGGCCGCGATGAGGCTTTGGCGCTGCAGGGCAGCGGTT
TCGACTTCAGCAACGATGAGATCGAATCGTTCTCGGATACGGACCGCAAGCTCGCCGACGAGTCGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 4CHG

Antitoxin

Source ID Structure
AlphaFold DB A0A806JLL8

References