Detailed information of TA system TA132141

Bioinformatically predicted

Overview

TA module

• Type: II
• Classification (family/domain): vapBC/VapC-VapB
• Location: 3059563..3060242
• Replicon: chromosome
• Accession: NZ_CP041835
• Organism: Mycobacterium tuberculosis strain 2-0034P6C4

Toxin (Protein)

• Gene name: vapC
• Uniprot ID: P9WF90
• Locus tag: FPJ73_RS14405
• Protein ID: WP_003414059.1
• Coordinates: 3059563..3059979 (-)
• Length: 139 a.a.

Antitoxin (Protein)

• Gene name: vapB
• Uniprot ID: G0TF64
• Locus tag: FPJ73_RS14410
• Protein ID: WP_003414061.1
• Coordinates: 3059976..3060242 (-)
• Length: 89 a.a.

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
FPJ73_RS14385	3055615..3056517	-	903	WP_003900564.1	4-hydroxy-tetrahydrodipicolinate synthase	-
FPJ73_RS14390	3056586..3057338	-	753	WP_003899465.1	FAD-dependent thymidylate synthase	-
FPJ73_RS14395	3057582..3057857	-	276	WP_003414055.1	type I restriction endonuclease subunit S	-
FPJ73_RS14400	3057854..3059476	-	1623	WP_003414057.1	type I restriction-modification system subunit M	-
FPJ73_RS14405	3059563..3059979	-	417	WP_003414059.1	type II toxin-antitoxin system toxin ribonuclease C21	Toxin
FPJ73_RS14410	3059976..3060242	-	267	WP_003414061.1	type II toxin-antitoxin system VapB family antitoxin	Antitoxin
FPJ73_RS14415	3060268..3060663	-	396	WP_003414064.1	type II toxin-antitoxin system VapC family toxin	-
FPJ73_RS14420	3060660..3060929	-	270	WP_003414066.1	type II toxin-antitoxin system VapB family antitoxin	-
FPJ73_RS14425	3060939..3062033	-	1095	WP_003414068.1	restriction endonuclease subunit S	-
FPJ73_RS14430	3062030..3062449	-	420	WP_003414070.1	winged helix-turn-helix domain-containing protein	-
FPJ73_RS14435	3062523..3063002	-	480	WP_003414073.1	dihydrofolate reductase	-
FPJ73_RS14440	3063073..3063873	-	801	WP_031713946.1	thymidylate synthase	-
FPJ73_RS14445	3064029..3064766	+	738	WP_003414079.1	dienelactone hydrolase family protein	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Domains

Predicted by InterproScan

Toxin

• PIN domain (5-123)

Antitoxin

• Bacterial antitoxin of type II TA system, VapB (16-56)

Sequences

Toxin

Protein

• Length: 139 a.a.
• Molecular weight: 15773.00 Da
• Isoelectric Point: 7.1294

>T132141 WP_003414059.1 NZ_CP041835:c3059979-3059563 [Mycobacterium tuberculosis]
MTTRYLLDKSAAYRAHLPAVRHRLEPLMERGLLARCGITDLEFGVSARSREDHRTLGTYRRDALEYVNTPDTVWVRAWEI
QEALTDKGFHRSVKIPDLIIAAVAEHHGIPVMHYDQDFERIAAITRQPVEWVVAPGTA

Nucleotide

• Length: 417 bp

>T132141 NZ_CP041835:c3059979-3059563 [Mycobacterium tuberculosis]
ATGACCACGCGCTATTTGCTCGACAAATCAGCGGCTTACCGCGCGCACTTGCCCGCGGTCCGACATCGCTTGGAACCGTT
GATGGAACGCGGTCTACTGGCCCGGTGCGGCATTACCGATCTCGAGTTCGGAGTCTCGGCGCGTTCCCGCGAGGACCATC
GAACACTGGGCACCTACCGGCGTGACGCGCTCGAATACGTCAACACCCCCGACACCGTGTGGGTTCGTGCATGGGAGATC
CAAGAAGCATTGACCGACAAGGGATTTCACCGCTCGGTCAAGATCCCGGACTTGATCATTGCGGCGGTCGCCGAGCATCA
CGGCATACCCGTCATGCACTACGACCAAGACTTCGAACGCATCGCCGCCATCACACGGCAACCCGTGGAATGGGTGGTGG
CCCCAGGGACAGCGTGA

Antitoxin

Protein

• Length: 89 a.a.
• Molecular weight: 9493.77 Da
• Isoelectric Point: 7.2783

>AT132141 WP_003414061.1 NZ_CP041835:c3060242-3059976 [Mycobacterium tuberculosis]
MHRGYALVVCSPGVTRTMIDIDDDLLARAAKELGTTTKKDTVHAALRAALRASAARSLMNRMAENATGTQDEALVNAMWR
DGHPENTA

Nucleotide

• Length: 267 bp

>AT132141 NZ_CP041835:c3060242-3059976 [Mycobacterium tuberculosis]
ATGCATCGCGGATATGCATTAGTAGTATGCTCTCCGGGTGTGACGCGCACCATGATCGACATCGATGACGACCTGCTCGC
TCGGGCCGCCAAGGAACTGGGTACCACGACAAAGAAAGACACCGTGCATGCCGCGCTGCGGGCCGCGTTGCGAGCCAGTG
CCGCGCGCTCGCTCATGAACCGGATGGCCGAGAACGCCACCGGAACCCAGGACGAAGCTCTGGTCAACGCAATGTGGCGA
GACGGCCACCCAGAGAACACGGCATGA

Structures

Toxin

• PDB: 5SV2

Antitoxin

• AlphaFold DB: G0TF64