Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) mazEF/MazF(toxin)
Location 750001..750541 Replicon chromosome
Accession NZ_CP041832
Organism Mycobacterium tuberculosis strain 2-0052P6C4

Toxin (Protein)


Gene name mazF Uniprot ID P9WII0
Locus tag FPJ76_RS03435 Protein ID WP_003403376.1
Coordinates 750001..750309 (-) Length 103 a.a.

Antitoxin (Protein)


Gene name mazE Uniprot ID G0TQE0
Locus tag FPJ76_RS03440 Protein ID WP_003403381.1
Coordinates 750296..750541 (-) Length 82 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ76_RS03410 745317..746822 + 1506 WP_003403360.1 carotenoid cleavage oxygenase -
FPJ76_RS03415 746903..747913 + 1011 WP_003911248.1 ABC transporter ATP-binding protein -
FPJ76_RS03420 748301..748684 - 384 WP_003403365.1 ribonuclease VapC6 -
FPJ76_RS03425 748779..748934 - 156 WP_003403368.1 type II toxin-antitoxin system VapB family antitoxin -
FPJ76_RS03430 749010..749725 - 716 Protein_677 CPBP family intramembrane metalloprotease -
FPJ76_RS03435 750001..750309 - 309 WP_003403376.1 type II toxin-antitoxin system PemK/MazF family toxin Toxin
FPJ76_RS03440 750296..750541 - 246 WP_003403381.1 ribbon-helix-helix protein, CopG family Antitoxin
FPJ76_RS03445 750651..751088 - 438 WP_003403386.1 type II toxin-antitoxin system VapC family toxin -
FPJ76_RS03450 751085..751339 - 255 WP_003911263.1 antitoxin VapB7 -
FPJ76_RS03455 751453..753816 + 2364 WP_003901895.1 arylsulfatase AtsD -
FPJ76_RS03460 753879..754205 + 327 WP_003403401.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
FPJ76_RS03465 754117..754455 + 339 WP_003403405.1 PIN domain-containing protein -
FPJ76_RS03470 754452..754625 + 174 WP_003898549.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

mRNA interferase PemK-like

(1-101)

Antitoxin

Ribbon-helix-helix protein, CopG

(2-38)


Sequences

Toxin        


Download         Length: 103 a.a.        Molecular weight: 11320.10 Da        Isoelectric Point: 11.6554

>T131925 WP_003403376.1 NZ_CP041832:c750309-750001 [Mycobacterium tuberculosis]
MRRGELWFAATPGGDRPVLVLTRDPVADRIGAVVVVALTRTRRGLVSELELTAVENRVPSDCVVNFDNIHTLPRTAFRRR
ITRLSPARLHEACQTLRASTGC

Download         Length: 309 bp

>T131925 NZ_CP041832:c750309-750001 [Mycobacterium tuberculosis]
ATGCGGCGCGGTGAATTGTGGTTTGCCGCCACACCTGGTGGTGACAGACCAGTACTTGTCCTTACCAGAGATCCGGTGGC
AGACCGCATCGGCGCGGTCGTTGTGGTGGCCCTAACCCGCACCCGCCGAGGCCTGGTGTCGGAATTGGAGCTCACGGCCG
TCGAAAACCGTGTTCCGAGCGACTGCGTCGTCAACTTCGACAACATTCATACGTTGCCACGCACCGCATTCCGACGCCGC
ATCACCCGGCTGTCCCCGGCCCGCCTGCACGAAGCCTGTCAAACACTCCGGGCGAGCACGGGGTGTTGA

Antitoxin


Download         Length: 82 a.a.        Molecular weight: 9169.01 Da        Isoelectric Point: 4.2070

>AT131925 WP_003403381.1 NZ_CP041832:c750541-750296 [Mycobacterium tuberculosis]
MLSFRADDHDVDLADAWARRLHIGRSELLRDALRRHLAALAADQDVQAYTERPLTDDENALAEIADWGPAEDWADWADAA
R

Download         Length: 246 bp

>AT131925 NZ_CP041832:c750541-750296 [Mycobacterium tuberculosis]
ATGCTCAGCTTCCGCGCCGACGACCACGACGTCGACCTGGCCGACGCGTGGGCGCGTCGCCTACACATCGGCCGCTCCGA
GCTGCTGCGCGATGCGCTGCGACGTCACTTGGCCGCGCTGGCCGCGGACCAGGATGTCCAGGCCTACACCGAGCGACCGT
TGACGGACGACGAGAACGCACTGGCTGAGATCGCCGACTGGGGGCCGGCGGAGGACTGGGCCGACTGGGCCGATGCGGCG
CGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A7U4BSE5

Antitoxin

Source ID Structure
AlphaFold DB G0TQE0

References