Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type II Classification (family/domain) vapBC/PIN(toxin)
Location 1385798..1386486 Replicon chromosome
Accession NZ_CP041830
Organism Mycobacterium tuberculosis strain 2-0068P6C4

Toxin (Protein)


Gene name vapC Uniprot ID G0THR7
Locus tag FPJ78_RS06510 Protein ID WP_003406304.1
Coordinates 1386055..1386486 (+) Length 144 a.a.

Antitoxin (Protein)


Gene name vapB Uniprot ID G0THR6
Locus tag FPJ78_RS06505 Protein ID WP_003406302.1
Coordinates 1385798..1386058 (+) Length 87 a.a.

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
FPJ78_RS06485 1381375..1382199 + 825 WP_003900298.1 trehalose ABC transporter permease SugB -
FPJ78_RS06490 1382204..1383385 + 1182 WP_003406299.1 trehalose ABC transporter ATP-binding protein SugC -
FPJ78_RS06495 1383462..1384562 - 1101 WP_003406300.1 magnesium/cobalt transporter CorA -
FPJ78_RS06500 1384733..1385722 + 990 WP_003406301.1 malate dehydrogenase -
FPJ78_RS06505 1385798..1386058 + 261 WP_003406302.1 type II toxin-antitoxin system antitoxin VapB33 Antitoxin
FPJ78_RS06510 1386055..1386486 + 432 WP_003406304.1 type II toxin-antitoxin system VapC family toxin Toxin
FPJ78_RS06515 1386509..1388092 - 1584 WP_009940130.1 PE family protein -
FPJ78_RS06520 1388272..1389132 + 861 WP_003900301.1 hypothetical protein -
FPJ78_RS06525 1389213..1390043 - 831 WP_003898788.1 SDR family NAD(P)-dependent oxidoreductase -
FPJ78_RS06530 1390100..1390393 - 294 WP_003898789.1 type II toxin-antitoxin system mRNA interferase RelE -
FPJ78_RS06535 1390390..1390659 - 270 WP_003406322.1 type II toxin-antitoxin system Phd/YefM family antitoxin -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains


Predicted by InterproScan

Toxin

(2-142)

Antitoxin


No domain identified.



Sequences


Toxin        


Download         Length: 144 a.a.        Molecular weight: 15873.08 Da        Isoelectric Point: 5.8838

>T131812 WP_003406304.1 NZ_CP041830:1386055-1386486 [Mycobacterium tuberculosis]
VIIPDINLLLYAVITGFPQHRRAHAWWQDTVNGHTRIGLTYPALFGFLRIATSARVLAAPLPTADAIAYVREWLSQPNVD
LLTAGPRHLDIALGLLDKLGTASHLTTDVQLAAYGIEYDAEIHSSDTDFARFADLKWTDPLRE

Download         Length: 432 bp

>T131812 NZ_CP041830:1386055-1386486 [Mycobacterium tuberculosis]
GTGATCATCCCTGACATCAATCTGCTGCTCTACGCGGTCATCACCGGATTCCCGCAGCACCGGCGCGCGCATGCGTGGTG
GCAAGACACCGTCAACGGCCACACCCGTATCGGGCTGACGTATCCGGCGTTGTTCGGGTTCCTACGGATCGCCACCAGTG
CCCGCGTGCTCGCCGCGCCACTGCCAACCGCGGATGCGATCGCCTATGTGCGCGAGTGGCTTTCGCAGCCGAACGTGGAC
CTACTCACGGCGGGTCCGCGCCACCTGGACATCGCGTTGGGCCTGCTCGACAAGCTCGGCACAGCCAGCCACCTAACCAC
CGATGTGCAACTGGCCGCCTACGGCATCGAATACGACGCCGAGATCCATTCCAGTGACACCGACTTTGCCCGATTCGCCG
ATCTGAAGTGGACCGACCCGTTGCGCGAATAA

Antitoxin


Download         Length: 87 a.a.        Molecular weight: 9918.25 Da        Isoelectric Point: 6.4755

>AT131812 WP_003406302.1 NZ_CP041830:1385798-1386058 [Mycobacterium tuberculosis]
MRTTLTLDDDVVRLVEDAVHRERRPMKQVINDALRRALAPPVKRQEQYRLEPHESAVRSGLDLAGFNKLADELEDEALLD
ATRRAR

Download         Length: 261 bp

>AT131812 NZ_CP041830:1385798-1386058 [Mycobacterium tuberculosis]
ATGCGCACCACCTTGACGCTCGATGACGACGTCGTCCGGCTGGTCGAAGACGCAGTGCATCGCGAACGCCGCCCGATGAA
GCAGGTCATCAACGATGCGCTGCGCAGAGCGCTGGCGCCGCCGGTGAAACGGCAGGAGCAGTATCGGTTGGAGCCGCATG
AGTCGGCTGTGCGTTCCGGGTTGGATCTGGCCGGCTTCAACAAGTTGGCCGACGAACTGGAGGATGAGGCGCTGCTGGAT
GCCACGCGTCGGGCCCGGTGA

Similar Proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures


Toxin

Source ID Structure
AlphaFold DB G0THR7


Antitoxin

Source ID Structure
AlphaFold DB G0THR6

References